Replace Links with cpfs/cpreq in Workflow Scripts

[AntonMFernando-NOAA]

Description

Some jobs in the current global-workflow create links from their working directories to files in the COM directory, allowing output to be written or accessed directly in COM.

• Use cpreq when files are copied from COM directory.

• Use cpfs when files are copied to COM directory

  Refs [NCO Bug] Replace links with copy/move/rsync in workflow scripts #712

Type of change

• Bug fix (fixes something broken)
• New feature (adds functionality)
• Maintenance (code refactor, clean-up, new CI test, etc.)

Change characteristics

• Is this change expected to change outputs (e.g. value changes to existing outputs, new files stored in COM, files removed from COM, filename changes, additions/subtractions to archives)? YES/NO (If YES, please indicate to which system(s))
  • GFS
  • GEFS
  • SFS
  • GCAFS
• Is this a breaking change (a change in existing functionality)? NO
• Does this change require a documentation update? NO
• Does this change require an update to any of the following submodules? NO (If YES, please add a link to any PRs that are pending.)
  • EMC verif-global
  • GDAS
  • GFS-utils
  • GSI
  • GSI-monitor
  • GSI-utils
  • UFS-utils
  • UFS-weather-model
  • wxflow

How has this been tested?

• CI tests on hera and extended tests on wcoss2

Checklist

• Any dependent changes have been merged and published
• My code follows the style guidelines of this project
• I have performed a self-review of my own code
• I have commented my code, particularly in hard-to-understand areas
• I have documented my code, including function, input, and output descriptions
• My changes generate no new warnings
• New and existing tests pass with my changes
• This change is covered by an existing CI test or a new one has been added
• Any new scripts have been added to the .github/CODEOWNERS file with owners
• I have made corresponding changes to the system documentation if necessary

[DavidHuber-NOAA]

Looks good. There's just one member loop that should stay as links and I spotted a COMIN that should be a COMOUT.

[DavidHuber-NOAA]

LGTM

[DavidHuber-NOAA]

Launching tests on Ursa.

[DavidHuber-NOAA]

@AntonMFernando-NOAA has verified b4b identical results between this branch and develop. Merging.