Ensures any failure in piped output is captured and reported. by aerorahul · Pull Request #4328 · NOAA-EMC/global-workflow

aerorahul · 2025-12-12T22:23:05Z

Description

This PR:

Resolves Add set -o pipefail to set_strict #4263

This PR also provides a hotfix for #4334

Fixes GCAFS Attempts to archive non-existent pres_b products #4334

Type of change

Maintenance (code refactor, clean-up, new CI test, etc.)

Change characteristics

Is this change expected to change outputs (e.g. value changes to existing outputs, new files stored in COM, files removed from COM, filename changes, additions/subtractions to archives)? NO
Is this a breaking change (a change in existing functionality)? NO
Does this change require a documentation update? NO
Does this change require an update to any of the following submodules? NO

How has this been tested?

GFS tests on GaeaC6 and WCOSS
More testing is in progress

Checklist

…not found in the ufsgsi test

WalterKolczynski-NOAA

I'm worried that sometimes we want to ignore the pipefail (particularly when using grep with wgrib2).

.shellcheckrc

DavidHuber-NOAA

Just a couple of suggestions with find speedups. Otherwise, it looks good. I'm expecting a few more bugs to resolve as testing continues.

dev/scripts/exglobal_atmos_analysis.sh

dev/scripts/exglobal_diag.sh

dev/scripts/exglobal_atmos_analysis.sh

aerorahul · 2025-12-15T14:59:22Z

I'm worried that sometimes we want to ignore the pipefail (particularly when using grep with wgrib2).

Thanks @WalterKolczynski-NOAA
Do you know where that is the case presently? If we know, then we can wrap that call with unset_strict such that"

unset_strict
wgrib2 ....
set_strict

What do you think?

.shellcheckrc

Co-authored-by: David Huber <[email protected]> Co-authored-by: Travis Elless <[email protected]>

DavidHuber-NOAA

Looks good to me.

emcbot · 2025-12-18T21:28:00Z

C96C48_hybatmDA FAILED on Ursa (pipeline ID: 6509)

In directory: /scratch3/NCEPDEV/global/role.glopara/GFS_CI_CD/URSA/BUILDS/GITLAB/pr_cases_4328_5a190987_6509/RUNTESTS/EXPDIR/C96C48_hybatmDA_5a190987-6509

Error Log Files:


/scratch3/NCEPDEV/global/role.glopara/GFS_CI_CD/URSA/BUILDS/GITLAB/pr_cases_4328_5a190987_6509/RUNTESTS/COMROOT/C96C48_hybatmDA_5a190987-6509/logs/2021122018/gdas_atmos_prod_f000.log

View Error Logs: (gdas_atmos_prod_f000.log)

This failure was detected automatically by global-workflow's CI/CD Pipeline

emcbot · 2025-12-18T21:28:00Z

C96C48_hybatmsnowDA FAILED on Ursa (pipeline ID: 6509)

In directory: /scratch3/NCEPDEV/global/role.glopara/GFS_CI_CD/URSA/BUILDS/GITLAB/pr_cases_4328_5a190987_6509/RUNTESTS/EXPDIR/C96C48_hybatmsnowDA_5a190987-6509

Error Log Files:


/scratch3/NCEPDEV/global/role.glopara/GFS_CI_CD/URSA/BUILDS/GITLAB/pr_cases_4328_5a190987_6509/RUNTESTS/COMROOT/C96C48_hybatmsnowDA_5a190987-6509/logs/2021122012/gdas_atmos_prod_f000.log

View Error Logs: (gdas_atmos_prod_f000.log)

This failure was detected automatically by global-workflow's CI/CD Pipeline

emcbot · 2025-12-18T21:28:00Z

C96C48_ufsgsi_hybatmDA FAILED on Ursa (pipeline ID: 6509)

In directory: /scratch3/NCEPDEV/global/role.glopara/GFS_CI_CD/URSA/BUILDS/GITLAB/pr_cases_4328_5a190987_6509/RUNTESTS/EXPDIR/C96C48_ufsgsi_hybatmDA_5a190987-6509

Error Log Files:


/scratch3/NCEPDEV/global/role.glopara/GFS_CI_CD/URSA/BUILDS/GITLAB/pr_cases_4328_5a190987_6509/RUNTESTS/COMROOT/C96C48_ufsgsi_hybatmDA_5a190987-6509/logs/2024022318/gdas_atmos_prod_f000.log

View Error Logs: (gdas_atmos_prod_f000.log)

This failure was detected automatically by global-workflow's CI/CD Pipeline

emcbot · 2025-12-18T21:28:01Z

C96C48_hybatmsoilDA FAILED on Ursa (pipeline ID: 6509)

In directory: /scratch3/NCEPDEV/global/role.glopara/GFS_CI_CD/URSA/BUILDS/GITLAB/pr_cases_4328_5a190987_6509/RUNTESTS/EXPDIR/C96C48_hybatmsoilDA_5a190987-6509

Error Log Files:


/scratch3/NCEPDEV/global/role.glopara/GFS_CI_CD/URSA/BUILDS/GITLAB/pr_cases_4328_5a190987_6509/RUNTESTS/COMROOT/C96C48_hybatmsoilDA_5a190987-6509/logs/2022051506/gdas_atmos_prod_f000.log

View Error Logs: (gdas_atmos_prod_f000.log)

This failure was detected automatically by global-workflow's CI/CD Pipeline

emcbot · 2025-12-18T21:28:01Z

C48mx500_hybAOWCDA FAILED on Ursa (pipeline ID: 6509)

In directory: /scratch3/NCEPDEV/global/role.glopara/GFS_CI_CD/URSA/BUILDS/GITLAB/pr_cases_4328_5a190987_6509/RUNTESTS/EXPDIR/C48mx500_hybAOWCDA_5a190987-6509

Error Log Files:


/scratch3/NCEPDEV/global/role.glopara/GFS_CI_CD/URSA/BUILDS/GITLAB/pr_cases_4328_5a190987_6509/RUNTESTS/COMROOT/C48mx500_hybAOWCDA_5a190987-6509/logs/2021032418/gdas_atmos_prod_f000.log

View Error Logs: (gdas_atmos_prod_f000.log)

This failure was detected automatically by global-workflow's CI/CD Pipeline

emcbot · 2025-12-18T21:28:01Z

C96_atm3DVar FAILED on Ursa (pipeline ID: 6509)

In directory: /scratch3/NCEPDEV/global/role.glopara/GFS_CI_CD/URSA/BUILDS/GITLAB/pr_cases_4328_5a190987_6509/RUNTESTS/EXPDIR/C96_atm3DVar_5a190987-6509

Error Log Files:


/scratch3/NCEPDEV/global/role.glopara/GFS_CI_CD/URSA/BUILDS/GITLAB/pr_cases_4328_5a190987_6509/RUNTESTS/COMROOT/C96_atm3DVar_5a190987-6509/logs/2021122018/gdas_atmos_prod_f000.log

View Error Logs: (gdas_atmos_prod_f000.log)

This failure was detected automatically by global-workflow's CI/CD Pipeline

emcbot · 2025-12-18T21:28:01Z

C96C48_ufs_hybatmDA FAILED on Ursa (pipeline ID: 6509)

In directory: /scratch3/NCEPDEV/global/role.glopara/GFS_CI_CD/URSA/BUILDS/GITLAB/pr_cases_4328_5a190987_6509/RUNTESTS/EXPDIR/C96C48_ufs_hybatmDA_5a190987-6509

Error Log Files:


/scratch3/NCEPDEV/global/role.glopara/GFS_CI_CD/URSA/BUILDS/GITLAB/pr_cases_4328_5a190987_6509/RUNTESTS/COMROOT/C96C48_ufs_hybatmDA_5a190987-6509/logs/2024022318/gdas_atmos_prod_f000.log

View Error Logs: (gdas_atmos_prod_f000.log)

This failure was detected automatically by global-workflow's CI/CD Pipeline

emcbot · 2025-12-18T21:28:02Z

C48_S2SW FAILED on Ursa (pipeline ID: 6509)

In directory: /scratch3/NCEPDEV/global/role.glopara/GFS_CI_CD/URSA/BUILDS/GITLAB/pr_cases_4328_5a190987_6509/RUNTESTS/EXPDIR/C48_S2SW_5a190987-6509

Error Log Files:


/scratch3/NCEPDEV/global/role.glopara/GFS_CI_CD/URSA/BUILDS/GITLAB/pr_cases_4328_5a190987_6509/RUNTESTS/COMROOT/C48_S2SW_5a190987-6509/logs/2021032312/gfs_atmos_prod_f000-f002.log

View Error Logs: (gfs_atmos_prod_f000-f002.log)

This failure was detected automatically by global-workflow's CI/CD Pipeline

emcbot · 2025-12-18T21:28:02Z

C48mx500_3DVarAOWCDA FAILED on Ursa (pipeline ID: 6509)

In directory: /scratch3/NCEPDEV/global/role.glopara/GFS_CI_CD/URSA/BUILDS/GITLAB/pr_cases_4328_5a190987_6509/RUNTESTS/EXPDIR/C48mx500_3DVarAOWCDA_5a190987-6509

Error Log Files:


/scratch3/NCEPDEV/global/role.glopara/GFS_CI_CD/URSA/BUILDS/GITLAB/pr_cases_4328_5a190987_6509/RUNTESTS/COMROOT/C48mx500_3DVarAOWCDA_5a190987-6509/logs/2021032418/gdas_atmos_prod_f000.log

View Error Logs: (gdas_atmos_prod_f000.log)

This failure was detected automatically by global-workflow's CI/CD Pipeline

emcbot · 2025-12-18T21:28:06Z

C96C48mx500_S2SW_cyc_gfs FAILED on Ursa (pipeline ID: 6509)

In directory: /scratch3/NCEPDEV/global/role.glopara/GFS_CI_CD/URSA/BUILDS/GITLAB/pr_cases_4328_5a190987_6509/RUNTESTS/EXPDIR/C96C48mx500_S2SW_cyc_gfs_5a190987-6509

Error Log Files:


/scratch3/NCEPDEV/global/role.glopara/GFS_CI_CD/URSA/BUILDS/GITLAB/pr_cases_4328_5a190987_6509/RUNTESTS/COMROOT/C96C48mx500_S2SW_cyc_gfs_5a190987-6509/logs/2021122012/gdas_atmos_prod_f000.log

View Error Logs: (gdas_atmos_prod_f000.log)

This failure was detected automatically by global-workflow's CI/CD Pipeline

emcbot · 2025-12-18T21:28:08Z

C96mx100_S2S FAILED on Ursa (pipeline ID: 6509)

In directory: /scratch3/NCEPDEV/global/role.glopara/GFS_CI_CD/URSA/BUILDS/GITLAB/pr_cases_4328_5a190987_6509/RUNTESTS/EXPDIR/C96mx100_S2S_5a190987-6509

Error Log Files:


/scratch3/NCEPDEV/global/role.glopara/GFS_CI_CD/URSA/BUILDS/GITLAB/pr_cases_4328_5a190987_6509/RUNTESTS/COMROOT/C96mx100_S2S_5a190987-6509/logs/1994050100/sfs_atmos_prod_mem000_f000.log
/scratch3/NCEPDEV/global/role.glopara/GFS_CI_CD/URSA/BUILDS/GITLAB/pr_cases_4328_5a190987_6509/RUNTESTS/COMROOT/C96mx100_S2S_5a190987-6509/logs/1994050100/sfs_atmos_prod_mem001_f000.log
/scratch3/NCEPDEV/global/role.glopara/GFS_CI_CD/URSA/BUILDS/GITLAB/pr_cases_4328_5a190987_6509/RUNTESTS/COMROOT/C96mx100_S2S_5a190987-6509/logs/1994050100/sfs_atmos_prod_mem002_f000.log

View Error Logs: (sfs_atmos_prod_mem000_f000.log) (sfs_atmos_prod_mem001_f000.log) (sfs_atmos_prod_mem002_f000.log)

This failure was detected automatically by global-workflow's CI/CD Pipeline

emcbot · 2025-12-18T21:32:16Z

C48_S2SW FAILED on Hercules (pipeline ID: 6509)

In directory: /work2/noaa/global/role-global/GFS_CI_CD/HERCULES/BUILDS/GITLAB/pr_cases_4328_5a190987_6509/RUNTESTS/EXPDIR/C48_S2SW_5a190987-6509

Error Log Files:


/work2/noaa/global/role-global/GFS_CI_CD/HERCULES/BUILDS/GITLAB/pr_cases_4328_5a190987_6509/RUNTESTS/COMROOT/C48_S2SW_5a190987-6509/logs/2021032312/gfs_atmos_prod_f000-f002.log

View Error Logs: (gfs_atmos_prod_f000-f002.log)

This failure was detected automatically by global-workflow's CI/CD Pipeline

emcbot · 2025-12-18T21:32:16Z

C48mx500_3DVarAOWCDA FAILED on Hercules (pipeline ID: 6509)

In directory: /work2/noaa/global/role-global/GFS_CI_CD/HERCULES/BUILDS/GITLAB/pr_cases_4328_5a190987_6509/RUNTESTS/EXPDIR/C48mx500_3DVarAOWCDA_5a190987-6509

Error Log Files:


/work2/noaa/global/role-global/GFS_CI_CD/HERCULES/BUILDS/GITLAB/pr_cases_4328_5a190987_6509/RUNTESTS/COMROOT/C48mx500_3DVarAOWCDA_5a190987-6509/logs/2021032418/gdas_atmos_prod_f000.log

View Error Logs: (gdas_atmos_prod_f000.log)

This failure was detected automatically by global-workflow's CI/CD Pipeline

emcbot · 2025-12-18T21:34:10Z

C48_S2SWA_gefs FAILED on Ursa (pipeline ID: 6509)

In directory: /scratch3/NCEPDEV/global/role.glopara/GFS_CI_CD/URSA/BUILDS/GITLAB/pr_cases_4328_5a190987_6509/RUNTESTS/EXPDIR/C48_S2SWA_gefs_5a190987-6509

Error Log Files:


/scratch3/NCEPDEV/global/role.glopara/GFS_CI_CD/URSA/BUILDS/GITLAB/pr_cases_4328_5a190987_6509/RUNTESTS/COMROOT/C48_S2SWA_gefs_5a190987-6509/logs/2021032312/gefs_atmos_prod_mem000_f000.log
/scratch3/NCEPDEV/global/role.glopara/GFS_CI_CD/URSA/BUILDS/GITLAB/pr_cases_4328_5a190987_6509/RUNTESTS/COMROOT/C48_S2SWA_gefs_5a190987-6509/logs/2021032312/gefs_atmos_prod_mem001_f000.log
/scratch3/NCEPDEV/global/role.glopara/GFS_CI_CD/URSA/BUILDS/GITLAB/pr_cases_4328_5a190987_6509/RUNTESTS/COMROOT/C48_S2SWA_gefs_5a190987-6509/logs/2021032312/gefs_atmos_prod_mem002_f000.log

View Error Logs: (gefs_atmos_prod_mem000_f000.log) (gefs_atmos_prod_mem001_f000.log) (gefs_atmos_prod_mem002_f000.log)

This failure was detected automatically by global-workflow's CI/CD Pipeline

emcbot · 2025-12-18T21:38:23Z

C96C48mx500_S2SW_cyc_gfs FAILED on Hercules (pipeline ID: 6509)

In directory: /work2/noaa/global/role-global/GFS_CI_CD/HERCULES/BUILDS/GITLAB/pr_cases_4328_5a190987_6509/RUNTESTS/EXPDIR/C96C48mx500_S2SW_cyc_gfs_5a190987-6509

Error Log Files:


/work2/noaa/global/role-global/GFS_CI_CD/HERCULES/BUILDS/GITLAB/pr_cases_4328_5a190987_6509/RUNTESTS/COMROOT/C96C48mx500_S2SW_cyc_gfs_5a190987-6509/logs/2021122012/gdas_atmos_prod_f000.log

View Error Logs: (gdas_atmos_prod_f000.log)

This failure was detected automatically by global-workflow's CI/CD Pipeline

emcbot · 2025-12-18T21:38:26Z

C96mx100_S2S FAILED on Hercules (pipeline ID: 6509)

In directory: /work2/noaa/global/role-global/GFS_CI_CD/HERCULES/BUILDS/GITLAB/pr_cases_4328_5a190987_6509/RUNTESTS/EXPDIR/C96mx100_S2S_5a190987-6509

Error Log Files:


/work2/noaa/global/role-global/GFS_CI_CD/HERCULES/BUILDS/GITLAB/pr_cases_4328_5a190987_6509/RUNTESTS/COMROOT/C96mx100_S2S_5a190987-6509/logs/1994050100/sfs_atmos_prod_mem000_f000.log
/work2/noaa/global/role-global/GFS_CI_CD/HERCULES/BUILDS/GITLAB/pr_cases_4328_5a190987_6509/RUNTESTS/COMROOT/C96mx100_S2S_5a190987-6509/logs/1994050100/sfs_atmos_prod_mem001_f000.log
/work2/noaa/global/role-global/GFS_CI_CD/HERCULES/BUILDS/GITLAB/pr_cases_4328_5a190987_6509/RUNTESTS/COMROOT/C96mx100_S2S_5a190987-6509/logs/1994050100/sfs_atmos_prod_mem002_f000.log

View Error Logs: (sfs_atmos_prod_mem000_f000.log) (sfs_atmos_prod_mem001_f000.log) (sfs_atmos_prod_mem002_f000.log)

This failure was detected automatically by global-workflow's CI/CD Pipeline

emcbot · 2025-12-18T21:38:30Z

C48_S2SWA_gefs FAILED on Hercules (pipeline ID: 6509)

In directory: /work2/noaa/global/role-global/GFS_CI_CD/HERCULES/BUILDS/GITLAB/pr_cases_4328_5a190987_6509/RUNTESTS/EXPDIR/C48_S2SWA_gefs_5a190987-6509

Error Log Files:


/work2/noaa/global/role-global/GFS_CI_CD/HERCULES/BUILDS/GITLAB/pr_cases_4328_5a190987_6509/RUNTESTS/COMROOT/C48_S2SWA_gefs_5a190987-6509/logs/2021032312/gefs_atmos_prod_mem000_f000.log
/work2/noaa/global/role-global/GFS_CI_CD/HERCULES/BUILDS/GITLAB/pr_cases_4328_5a190987_6509/RUNTESTS/COMROOT/C48_S2SWA_gefs_5a190987-6509/logs/2021032312/gefs_atmos_prod_mem001_f000.log
/work2/noaa/global/role-global/GFS_CI_CD/HERCULES/BUILDS/GITLAB/pr_cases_4328_5a190987_6509/RUNTESTS/COMROOT/C48_S2SWA_gefs_5a190987-6509/logs/2021032312/gefs_atmos_prod_mem002_f000.log

View Error Logs: (gefs_atmos_prod_mem000_f000.log) (gefs_atmos_prod_mem001_f000.log) (gefs_atmos_prod_mem002_f000.log)

This failure was detected automatically by global-workflow's CI/CD Pipeline

aerorahul · 2025-12-18T22:11:43Z

The failures in the gfs|gdas|sfs|gefs_atmos_products_f000 jobs are arising from #4347. Specifically,

global-workflow/dev/parm/config/gcafs/config.atmos_products

Line 34 in 5a19098

export paramlistb_f000="${PARMgfs}/product/gcafs.f000.paramlist.b.txt"

introduced in gcafs but not in gfs|gefs|sfs configs, and required for

global-workflow/dev/scripts/exglobal_atmos_products.sh

Line 20 in 5a19098

paramlistb="${paramlistb_f000}"

.

DavidHuber-NOAA · 2025-12-19T13:37:38Z

Launching on Hercules and Ursa.

CoryMartin-NOAA · 2025-12-19T13:47:26Z

@aerorahul @bbakernoaa is on AL today. Do you need me to open a bugfix PR for this or can those changes be incorporated here?

CoryMartin-NOAA · 2025-12-19T13:52:12Z

Never mind I see that @DavidHuber-NOAA reverted the PR. @bbakernoaa let's get this fixed in develop first then when we are back,

…as reverted

aerorahul · 2025-12-19T14:20:18Z

@DavidHuber-NOAA
I applied your suggestion to comment out the gcafs pres_b archiving. With that, hopefully develop will not fail on that account.

DavidHuber-NOAA · 2025-12-19T22:42:27Z

Turns out that Hercules never actually ran. The GitLab runner was killed at some point. Merging based on success on Ursa and WCOSS2.

aerorahul added 7 commits December 11, 2025 14:58

add function to unset_strict and pipefail

9f797bf

remove SC2312 from ush/

169825f

remove SC2312 from dev/scripts

a73ccfe

remove SC2312 from dev gempak and sorc

17a6d1f

was too lazy to take Walters change and work it, until now

63e3f39

Merge branch 'develop' into feature/pipedown

41b4aae

load grib_util modulefile on wcoss in the gw_gsi.wcoss2. RADSTAT was …

8faea41

…not found in the ufsgsi test

aerorahul requested review from DavidHuber-NOAA, EdwardSafford-NOAA, EricSinsky-NOAA, JessicaMeixner-NOAA, JiayiPeng-NOAA, RussTreadon-NOAA, TerrenceMcGuinness-NOAA, WenMeng-NOAA, guoqing-noaa, junwang-noaa and sbanihash as code owners December 12, 2025 22:23

WalterKolczynski-NOAA previously requested changes Dec 15, 2025

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DavidHuber-NOAA reviewed Dec 15, 2025

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TravisElless-NOAA reviewed Dec 15, 2025

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Merge branch 'develop' into feature/pipedown

e12b370

pipefail exposed an error when grepped line does not exist

05f6a25

aerorahul commented Dec 15, 2025

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Apply suggestions from code review

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Co-authored-by: David Huber <[email protected]> Co-authored-by: Travis Elless <[email protected]>

aerorahul requested review from DavidHuber-NOAA, TravisElless-NOAA and WalterKolczynski-NOAA December 15, 2025 18:15

DavidHuber-NOAA previously approved these changes Dec 15, 2025

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aerorahul mentioned this pull request Dec 18, 2025

Add cleanup task for the half cycle #4344

Merged

10 tasks

Merge branch 'develop' into feature/pipedown

1514b83

comment out the archiving of pres_b gcafs files since NOAA-EMC#4347 w…

09a6f27

…as reverted

aerorahul mentioned this pull request Dec 19, 2025

Disable pres_b archiving of gcafs products #4362

Merged

15 tasks

DavidHuber-NOAA mentioned this pull request Dec 19, 2025

Revamp obs staging and analysis stats job #4306

Merged

26 tasks

Merge branch 'develop' into feature/pipedown

b067f4a

DavidHuber-NOAA approved these changes Dec 19, 2025

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