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Update EE2 Environment Variables: Replace NET-Specific (VARgfs) with Global (VARglobal) #2073

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Update EE2 Environment Variables: Replace NET-Specific (VARgfs) with Global (VARglobal) #2073

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5ea6e57
update HOMEgfs->HOMEglobal
AntonMFernando-NOAA Feb 20, 2026
6943a5d
Merge branch 'NOAA-EMC:develop' into main/EE2_global
AntonMFernando-NOAA Feb 23, 2026
b3fc0c7
update HOMEgfs->HOMEglobal
AntonMFernando-NOAA Feb 23, 2026
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6 changes: 3 additions & 3 deletions build.sh
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Expand Up @@ -51,7 +51,7 @@ BUILD_SOCA=${BUILD_SOCA:-"ON"}
while getopts "w:t:c:hvdfai" opt; do
case $opt in
w)
HOMEgfs=$OPTARG
HOMEglobal=$OPTARG
;;
t)
BUILD_TARGET=$OPTARG
Expand Down Expand Up @@ -117,8 +117,8 @@ if [[ $BUILD_SOCA == 'ON' ]]; then
# Link MOM6 and Icepack in SOCA to submodules in the UFS repo
rm -rf $dir_root/sorc/soca/external/mom6/MOM6
rm -rf $dir_root/sorc/soca/external/icepack/Icepack
ln -sf $HOMEgfs/sorc/ufs_model.fd/MOM6-interface/MOM6/ $dir_root/sorc/soca/external/mom6/MOM6
ln -sf $HOMEgfs/sorc/ufs_model.fd/CICE-interface/CICE/icepack/ $dir_root/sorc/soca/external/icepack/Icepack
ln -sf $HOMEglobal/sorc/ufs_model.fd/MOM6-interface/MOM6/ $dir_root/sorc/soca/external/mom6/MOM6
ln -sf $HOMEglobal/sorc/ufs_model.fd/CICE-interface/CICE/icepack/ $dir_root/sorc/soca/external/icepack/Icepack
else
# Delete forked SOCA NOAA-EMC dev/emc repo and clone the original JCSDA develop repo
rm -rf "$dir_root/sorc/soca/"
Expand Down
12 changes: 6 additions & 6 deletions parm/aero/aero_bmat_config.yaml.j2
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@@ -1,22 +1,22 @@
jedi_config:
aero_interpbkg:
rundir: '{{ DATA }}'
exe_src: '{{ EXECgfs }}/gdas.x'
exe_src: '{{ EXECglobal }}/gdas.x'
jedi_args: ['fv3jedi', 'convertstate']
mpi_cmd: '{{ APRUN_AEROANLGENB }}'
jcb_base_yaml: '{{ PARMgfs }}/gdas/aero/jcb-base.yaml.j2'
jcb_base_yaml: '{{ PARMglobal }}/gdas/aero/jcb-base.yaml.j2'
jcb_algo: aero_convert_background
aero_diagb:
rundir: '{{ DATA }}'
exe_src: '{{ EXECgfs }}/gdas_fv3jedi_chem_diagb.x'
exe_src: '{{ EXECglobal }}/gdas_fv3jedi_chem_diagb.x'
mpi_cmd: '{{ APRUN_AEROANLGENB }}'
jcb_base_yaml: '{{ PARMgfs }}/gdas/aero/jcb-base.yaml.j2'
jcb_base_yaml: '{{ PARMglobal }}/gdas/aero/jcb-base.yaml.j2'
jcb_algo: aero_gen_bmatrix_diagb
aero_diffusion:
rundir: '{{ DATA }}'
exe_src: '{{ EXECgfs }}/gdas_fv3jedi_error_covariance_toolbox.x'
exe_src: '{{ EXECglobal }}/gdas_fv3jedi_error_covariance_toolbox.x'
mpi_cmd: '{{ APRUN_AEROANLGENB }}'
jcb_base_yaml: '{{ PARMgfs }}/gdas/aero/jcb-base.yaml.j2'
jcb_base_yaml: '{{ PARMglobal }}/gdas/aero/jcb-base.yaml.j2'
jcb_algo: aero_gen_bmatrix_diffusion

data_in:
Expand Down
4 changes: 2 additions & 2 deletions parm/aero/aero_det_config.yaml.j2
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@@ -1,11 +1,11 @@
jedi_config:
aeroanlvar:
rundir: '{{ DATA }}'
exe_src: '{{ EXECgfs }}/gdas.x'
exe_src: '{{ EXECglobal }}/gdas.x'
mpi_cmd: '{{ APRUN_AEROANL }}'
jedi_args: ['fv3jedi', 'variational']
jcb_algo: '3dfgat'
jcb_base_yaml: '{{ PARMgfs }}/gdas/aero/jcb-base.yaml.j2'
jcb_base_yaml: '{{ PARMglobal }}/gdas/aero/jcb-base.yaml.j2'
obs_list_yaml: '{{ OBS_LIST_YAML }}'

data_in:
Expand Down
6 changes: 3 additions & 3 deletions parm/aero/aero_stage_jedi_fix.yaml.j2
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@@ -1,3 +1,3 @@
- ['{{ FIXgfs }}/gdas/fv3jedi/fv3files/akbk{{ npz }}.nc4', '{{ DATA }}/fv3jedi/akbk.nc4']
- ['{{ FIXgfs }}/gdas/fv3jedi/fv3files/fmsmpp.nml', '{{ DATA }}/fv3jedi/fmsmpp.nml']
- ['{{ FIXgfs }}/gdas/fv3jedi/fv3files/field_table_gfdl', '{{ DATA }}/fv3jedi/field_table']
- ['{{ FIXglobal }}/gdas/fv3jedi/fv3files/akbk{{ npz }}.nc4', '{{ DATA }}/fv3jedi/akbk.nc4']
- ['{{ FIXglobal }}/gdas/fv3jedi/fv3files/fmsmpp.nml', '{{ DATA }}/fv3jedi/fmsmpp.nml']
- ['{{ FIXglobal }}/gdas/fv3jedi/fv3files/field_table_gfdl', '{{ DATA }}/fv3jedi/field_table']
10 changes: 5 additions & 5 deletions parm/aero/jcb-base.yaml.j2
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@@ -1,10 +1,10 @@
# Search path for model and obs for JCB
# -------------------------------------
algorithm_path: "{{PARMgfs}}/gdas/jcb-algorithms"
app_path_algorithm: "{{PARMgfs}}/gdas/jcb-gdas/algorithm/aero"
app_path_model: "{{PARMgfs}}/gdas/jcb-gdas/model/aero"
app_path_observations: "{{PARMgfs}}/gdas/jcb-gdas/observations/aero"
app_path_observation_chronicle: "{{PARMgfs}}/gdas/jcb-gdas/observation_chronicle/aero"
algorithm_path: "{{PARMglobal}}/gdas/jcb-algorithms"
app_path_algorithm: "{{PARMglobal}}/gdas/jcb-gdas/algorithm/aero"
app_path_model: "{{PARMglobal}}/gdas/jcb-gdas/model/aero"
app_path_observations: "{{PARMglobal}}/gdas/jcb-gdas/observations/aero"
app_path_observation_chronicle: "{{PARMglobal}}/gdas/jcb-gdas/observation_chronicle/aero"


# Places where we deviate from the generic file name of a yaml
Expand Down
14 changes: 7 additions & 7 deletions parm/analcalc/analcalc_config.yaml.j2
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@@ -1,27 +1,27 @@
jedi_config:
atm_addincrement:
rundir: '{{ DATA }}'
exe_src: '{{ EXECgfs }}/gdas.x'
exe_src: '{{ EXECglobal }}/gdas.x'
jedi_args: ['fv3jedi', 'addincrement']
mpi_cmd: '{{ APRUN_ANALCALC_FV3JEDI }}'
jcb_base_yaml: '{{ PARMgfs }}/gdas/atm/jcb-base.yaml.j2'
jcb_base_yaml: '{{ PARMglobal }}/gdas/atm/jcb-base.yaml.j2'
jcb_algo: atm_addincrement
{% if DO_AERO_ANL %}
aero_addincrement:
rundir: '{{ DATA }}'
exe_src: '{{ EXECgfs }}/gdas.x'
exe_src: '{{ EXECglobal }}/gdas.x'
jedi_args: ['fv3jedi', 'addincrement']
mpi_cmd: '{{ APRUN_ANALCALC_FV3JEDI }}'
jcb_base_yaml: '{{ PARMgfs }}/gdas/aero/jcb-base.yaml.j2'
jcb_base_yaml: '{{ PARMglobal }}/gdas/aero/jcb-base.yaml.j2'
jcb_algo: aero_addincrement
{% endif %}
{% if DO_JEDISNOWDA %}
snow_addincrement:
rundir: '{{ DATA }}'
exe_src: '{{ EXECgfs }}/gdas.x'
exe_src: '{{ EXECglobal }}/gdas.x'
jedi_args: ['fv3jedi', 'addincrement']
mpi_cmd: '{{ APRUN_ANALCALC_FV3JEDI }}'
jcb_base_yaml: '{{ PARMgfs }}/gdas/snow/jcb-base.yaml.j2'
jcb_base_yaml: '{{ PARMglobal }}/gdas/snow/jcb-base.yaml.j2'
jcb_algo: snow_addincrement
{% endif %}

Expand Down Expand Up @@ -66,7 +66,7 @@ data_in:
{% endif %}

{% filter indent(width=4) %}
{% include PARMgfs ~ '/gdas/' ~ '/atm/' ~ 'atm_stage_jedi_fix.yaml.j2' %}
{% include PARMglobal ~ '/gdas/' ~ '/atm/' ~ 'atm_stage_jedi_fix.yaml.j2' %}
{% endfilter %}

data_out:
Expand Down
6 changes: 3 additions & 3 deletions parm/anlstat/aero/jcb-base.yaml.j2
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@@ -1,8 +1,8 @@
# Search path for model and obs for JCB
# -------------------------------------
algorithm_path: "{{ PARMgfs }}/gdas/jcb-algorithms"
app_path_algorithm: "{{ PARMgfs }}/gdas/jcb-gdas/algorithm/observation_statistics"
app_path_observations: "{{ PARMgfs }}/gdas/jcb-gdas/observation_statistics/aero"
algorithm_path: "{{ PARMglobal }}/gdas/jcb-algorithms"
app_path_algorithm: "{{ PARMglobal }}/gdas/jcb-gdas/algorithm/observation_statistics"
app_path_observations: "{{ PARMglobal }}/gdas/jcb-gdas/observation_statistics/aero"

# Assimilation window
# -------------------
Expand Down
24 changes: 12 additions & 12 deletions parm/anlstat/anlstat_config.yaml.j2
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@@ -1,32 +1,32 @@
jedi_config:
aero:
rundir: '{{ DATA }}/aero'
exe_src: '{{ EXECgfs }}/gdas_ioda-stats.x'
exe_src: '{{ EXECglobal }}/gdas_ioda-stats.x'
mpi_cmd: '{{ APRUN_ANLSTAT }}'
jcb_base_yaml: '{{ PARMgfs }}/gdas/anlstat/aero/jcb-base.yaml.j2'
jcb_base_yaml: '{{ PARMglobal }}/gdas/anlstat/aero/jcb-base.yaml.j2'
jcb_algo: 'anlstat'
obs_list_yaml: '{{ PARMgfs }}/gdas/anlstat/aero/aero_obs_list.yaml.j2'
obs_list_yaml: '{{ PARMglobal }}/gdas/anlstat/aero/aero_obs_list.yaml.j2'
atmos:
rundir: '{{ DATA }}/atmos'
exe_src: '{{ EXECgfs }}/gdas_ioda-stats.x'
exe_src: '{{ EXECglobal }}/gdas_ioda-stats.x'
mpi_cmd: '{{ APRUN_ANLSTAT }}'
jcb_base_yaml: '{{ PARMgfs }}/gdas/anlstat/atmos/jcb-base.yaml.j2'
jcb_base_yaml: '{{ PARMglobal }}/gdas/anlstat/atmos/jcb-base.yaml.j2'
jcb_algo: 'anlstat'
obs_list_yaml: '{{ PARMgfs }}/gdas/anlstat/atmos/atmos_obs_list.yaml.j2'
obs_list_yaml: '{{ PARMglobal }}/gdas/anlstat/atmos/atmos_obs_list.yaml.j2'
atmos_gsi:
rundir: '{{ DATA }}/atmos_gsi'
exe_src: '{{ EXECgfs }}/gdas_ioda-stats.x'
exe_src: '{{ EXECglobal }}/gdas_ioda-stats.x'
mpi_cmd: '{{ APRUN_ANLSTAT }}'
jcb_base_yaml: '{{ PARMgfs }}/gdas/anlstat/atmos_gsi/jcb-base.yaml.j2'
jcb_base_yaml: '{{ PARMglobal }}/gdas/anlstat/atmos_gsi/jcb-base.yaml.j2'
jcb_algo: 'anlstat'
obs_list_yaml: '{{ PARMgfs }}/gdas/anlstat/atmos_gsi/atmos_gsi_obs_list.yaml.j2'
obs_list_yaml: '{{ PARMglobal }}/gdas/anlstat/atmos_gsi/atmos_gsi_obs_list.yaml.j2'
snow:
rundir: '{{ DATA }}/snow'
exe_src: '{{ EXECgfs }}/gdas_ioda-stats.x'
exe_src: '{{ EXECglobal }}/gdas_ioda-stats.x'
mpi_cmd: '{{ APRUN_ANLSTAT }}'
jcb_base_yaml: '{{ PARMgfs }}/gdas/anlstat/snow/jcb-base.yaml.j2'
jcb_base_yaml: '{{ PARMglobal }}/gdas/anlstat/snow/jcb-base.yaml.j2'
jcb_algo: 'anlstat'
obs_list_yaml: '{{ PARMgfs }}/gdas/anlstat/snow/snow_obs_list.yaml.j2'
obs_list_yaml: '{{ PARMglobal }}/gdas/anlstat/snow/snow_obs_list.yaml.j2'

data_in:
mkdir:
Expand Down
6 changes: 3 additions & 3 deletions parm/anlstat/atmos/jcb-base.yaml.j2
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@@ -1,8 +1,8 @@
# Search path for model and obs for JCB
# -------------------------------------
algorithm_path: "{{ PARMgfs }}/gdas/jcb-algorithms"
app_path_algorithm: "{{ PARMgfs }}/gdas/jcb-gdas/algorithm/observation_statistics"
app_path_observations: "{{ PARMgfs }}/gdas/jcb-gdas/observation_statistics/atmosphere"
algorithm_path: "{{ PARMglobal }}/gdas/jcb-algorithms"
app_path_algorithm: "{{ PARMglobal }}/gdas/jcb-gdas/algorithm/observation_statistics"
app_path_observations: "{{ PARMglobal }}/gdas/jcb-gdas/observation_statistics/atmosphere"

# Assimilation window
# -------------------
Expand Down
6 changes: 3 additions & 3 deletions parm/anlstat/atmos_gsi/jcb-base.yaml.j2
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# Search path for model and obs for JCB
# -------------------------------------
algorithm_path: "{{ PARMgfs }}/gdas/jcb-algorithms"
app_path_algorithm: "{{ PARMgfs }}/gdas/jcb-gdas/algorithm/observation_statistics"
app_path_observations: "{{ PARMgfs }}/gdas/jcb-gdas/observation_statistics/atmosphere_gsi"
algorithm_path: "{{ PARMglobal }}/gdas/jcb-algorithms"
app_path_algorithm: "{{ PARMglobal }}/gdas/jcb-gdas/algorithm/observation_statistics"
app_path_observations: "{{ PARMglobal }}/gdas/jcb-gdas/observation_statistics/atmosphere_gsi"

# Assimilation window
# -------------------
Expand Down
6 changes: 3 additions & 3 deletions parm/anlstat/snow/jcb-base.yaml.j2
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# Search path for model and obs for JCB
# -------------------------------------
algorithm_path: "{{ PARMgfs }}/gdas/jcb-algorithms"
app_path_algorithm: "{{ PARMgfs }}/gdas/jcb-gdas/algorithm/observation_statistics"
app_path_observations: "{{ PARMgfs }}/gdas/jcb-gdas/observation_statistics/snow"
algorithm_path: "{{ PARMglobal }}/gdas/jcb-algorithms"
app_path_algorithm: "{{ PARMglobal }}/gdas/jcb-gdas/algorithm/observation_statistics"
app_path_observations: "{{ PARMglobal }}/gdas/jcb-gdas/observation_statistics/snow"

# Assimilation window
# -------------------
Expand Down
8 changes: 4 additions & 4 deletions parm/atm/atm_det_config.yaml.j2
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@@ -1,18 +1,18 @@
jedi_config:
atmanlvar:
rundir: '{{ DATA }}'
exe_src: '{{ EXECgfs }}/gdas.x'
exe_src: '{{ EXECglobal }}/gdas.x'
mpi_cmd: '{{ APRUN_ATMANLVAR }}'
jedi_args: ['fv3jedi', 'variational']
jcb_algo: '3dvar'
jcb_base_yaml: '{{ PARMgfs }}/gdas/atm/jcb-base.yaml.j2'
jcb_base_yaml: '{{ PARMglobal }}/gdas/atm/jcb-base.yaml.j2'
obs_list_yaml: '{{ OBS_LIST_YAML }}'
atmanlfv3inc:
rundir: '{{ DATA }}'
exe_src: '{{ EXECgfs }}/gdas_fv3jedi_fv3inc.x'
exe_src: '{{ EXECglobal }}/gdas_fv3jedi_fv3inc.x'
mpi_cmd: '{{ APRUN_ATMANLFV3INC }}'
jcb_algo: 'fv3jedi_fv3inc_variational'
jcb_base_yaml: '{{ PARMgfs }}/gdas/atm/jcb-base.yaml.j2'
jcb_base_yaml: '{{ PARMglobal }}/gdas/atm/jcb-base.yaml.j2'

data_in:
mkdir:
Expand Down
4 changes: 2 additions & 2 deletions parm/atm/atm_det_stage_berror_gsibec.yaml.j2
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@@ -1,2 +1,2 @@
- ['{{ HOMEgfs }}/fix/gdas/gsibec/{{ CASE_ANL }}/gfs_gsi_global.nml', '{{ DATA }}/berror']
- ['{{ HOMEgfs }}/fix/gdas/gsibec/{{ CASE_ANL }}/gsi-coeffs-gfs-global.nc', '{{ DATA }}/berror']
- ['{{ HOMEglobal }}/fix/gdas/gsibec/{{ CASE_ANL }}/gfs_gsi_global.nml', '{{ DATA }}/berror']
- ['{{ HOMEglobal }}/fix/gdas/gsibec/{{ CASE_ANL }}/gsi-coeffs-gfs-global.nc', '{{ DATA }}/berror']
8 changes: 4 additions & 4 deletions parm/atm/atm_ecen_config.yaml.j2
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@@ -1,15 +1,15 @@
jedi_config:
correction_increment:
rundir: '{{ DATA }}'
exe_src: '{{ EXECgfs }}/gdas_fv3jedi_correction_increment.x'
exe_src: '{{ EXECglobal }}/gdas_fv3jedi_correction_increment.x'
mpi_cmd: '{{ APRUN_CORRECTION_INCREMENT }}'
jcb_base_yaml: '{{ PARMgfs }}/gdas/atm/jcb-base.yaml.j2'
jcb_base_yaml: '{{ PARMglobal }}/gdas/atm/jcb-base.yaml.j2'
jcb_algo: fv3jedi_correction_increment
ensemble_recenter:
rundir: '{{ DATA }}'
exe_src: '{{ EXECgfs }}/gdas_fv3jedi_ensemble_add_increment.x'
exe_src: '{{ EXECglobal }}/gdas_fv3jedi_ensemble_add_increment.x'
mpi_cmd: '{{ APRUN_ENSEMBLE_RECENTER }}'
jcb_base_yaml: '{{ PARMgfs }}/gdas/atm/jcb-base.yaml.j2'
jcb_base_yaml: '{{ PARMglobal }}/gdas/atm/jcb-base.yaml.j2'
jcb_algo: fv3jedi_ensemble_recenter

data_in:
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22 changes: 11 additions & 11 deletions parm/atm/atm_ens_config.yaml.j2
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@@ -1,33 +1,33 @@
jedi_config:
atmensanlobs:
rundir: '{{ DATA }}'
exe_src: '{{ EXECgfs }}/gdas.x'
exe_src: '{{ EXECglobal }}/gdas.x'
mpi_cmd: '{{ APRUN_ATMENSANLOBS }}'
jedi_args: ['fv3jedi', 'localensembleda']
jcb_base_yaml: '{{ PARMgfs }}/gdas/atm/jcb-base.yaml.j2'
jcb_algo_yaml: '{{ PARMgfs }}/gdas/atm/jcb-prototype_lgetkf_observer.yaml.j2'
jcb_base_yaml: '{{ PARMglobal }}/gdas/atm/jcb-base.yaml.j2'
jcb_algo_yaml: '{{ PARMglobal }}/gdas/atm/jcb-prototype_lgetkf_observer.yaml.j2'
obs_list_yaml: '{{ OBS_LIST_YAML }}'
atmensanlsol:
rundir: '{{ DATA }}'
exe_src: '{{ EXECgfs }}/gdas.x'
exe_src: '{{ EXECglobal }}/gdas.x'
mpi_cmd: '{{ APRUN_ATMENSANLSOL }}'
jedi_args: ['fv3jedi', 'localensembleda']
jcb_base_yaml: '{{ PARMgfs }}/gdas/atm/jcb-base.yaml.j2'
jcb_algo_yaml: '{{ PARMgfs }}/gdas/atm/jcb-prototype_lgetkf_solver.yaml.j2'
jcb_base_yaml: '{{ PARMglobal }}/gdas/atm/jcb-base.yaml.j2'
jcb_algo_yaml: '{{ PARMglobal }}/gdas/atm/jcb-prototype_lgetkf_solver.yaml.j2'
obs_list_yaml: '{{ OBS_LIST_YAML }}'
atmensanlfv3inc:
rundir: '{{ DATA }}'
exe_src: '{{ EXECgfs }}/gdas_fv3jedi_fv3inc.x'
exe_src: '{{ EXECglobal }}/gdas_fv3jedi_fv3inc.x'
mpi_cmd: '{{ APRUN_ATMENSANLFV3INC }}'
jcb_algo: 'fv3jedi_fv3inc_lgetkf'
jcb_base_yaml: '{{ PARMgfs }}/gdas/atm/jcb-base.yaml.j2'
jcb_base_yaml: '{{ PARMglobal }}/gdas/atm/jcb-base.yaml.j2'
atmensanlletkf:
rundir: '{{ DATA }}'
exe_src: '{{ EXECgfs }}/gdas.x'
exe_src: '{{ EXECglobal }}/gdas.x'
mpi_cmd: '{{ APRUN_ATMENSANLLETKF }}'
jedi_args: ['fv3jedi', 'localensembleda']
jcb_base_yaml: '{{ PARMgfs }}/gdas/atm/jcb-base.yaml.j2'
jcb_algo_yaml: '{{ PARMgfs }}/gdas/atm/jcb-prototype_lgetkf.yaml.j2'
jcb_base_yaml: '{{ PARMglobal }}/gdas/atm/jcb-base.yaml.j2'
jcb_algo_yaml: '{{ PARMglobal }}/gdas/atm/jcb-prototype_lgetkf.yaml.j2'
obs_list_yaml: '{{ OBS_LIST_YAML }}'

data_in:
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6 changes: 3 additions & 3 deletions parm/atm/atm_stage_jedi_fix.yaml.j2
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@@ -1,3 +1,3 @@
- ['{{ FIXgfs }}/gdas/fv3jedi/fv3files/akbk{{ npz }}.nc4', '{{ DATA }}/fv3jedi/akbk.nc4']
- ['{{ FIXgfs }}/gdas/fv3jedi/fv3files/fmsmpp.nml', '{{ DATA }}/fv3jedi/fmsmpp.nml']
- ['{{ FIXgfs }}/gdas/fv3jedi/fv3files/field_table_gfdl', '{{ DATA }}/fv3jedi/field_table']
- ['{{ FIXglobal }}/gdas/fv3jedi/fv3files/akbk{{ npz }}.nc4', '{{ DATA }}/fv3jedi/akbk.nc4']
- ['{{ FIXglobal }}/gdas/fv3jedi/fv3files/fmsmpp.nml', '{{ DATA }}/fv3jedi/fmsmpp.nml']
- ['{{ FIXglobal }}/gdas/fv3jedi/fv3files/field_table_gfdl', '{{ DATA }}/fv3jedi/field_table']
12 changes: 6 additions & 6 deletions parm/atm/jcb-base.yaml.j2
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@@ -1,10 +1,10 @@
# Search path for model and obs for JCB
# -------------------------------------
algorithm_path: "{{PARMgfs}}/gdas/jcb-algorithms"
app_path_algorithm: "{{PARMgfs}}/gdas/jcb-gdas/algorithm/atmosphere"
app_path_model: "{{PARMgfs}}/gdas/jcb-gdas/model/atmosphere"
app_path_observations: "{{PARMgfs}}/gdas/jcb-gdas/observations/atmosphere"
app_path_observation_chronicle: "{{PARMgfs}}/gdas/jcb-gdas/observation_chronicle/atmosphere"
algorithm_path: "{{PARMglobal}}/gdas/jcb-algorithms"
app_path_algorithm: "{{PARMglobal}}/gdas/jcb-gdas/algorithm/atmosphere"
app_path_model: "{{PARMglobal}}/gdas/jcb-gdas/model/atmosphere"
app_path_observations: "{{PARMglobal}}/gdas/jcb-gdas/observations/atmosphere"
app_path_observation_chronicle: "{{PARMglobal}}/gdas/jcb-gdas/observation_chronicle/atmosphere"


# Places where we deviate from the generic file name of a yaml
Expand Down Expand Up @@ -87,7 +87,7 @@ crtm_coefficient_path: "{{ DATA }}/crtm/"
# Naming conventions for observational files

atmosphere_obsdatain_path: "{{DATA}}/obs"
atmosphere_obsdatain_script_path: "{{HOMEgfs}}/ush/spoc/atmosphere"
atmosphere_obsdatain_script_path: "{{HOMEglobal}}/ush/spoc/atmosphere"
atmosphere_obsdatain_prefix: "{{OPREFIX}}"
atmosphere_obsdatain_suffix: ".nc"
atmosphere_obsdatain_suffix_bufr: ".tm00.bufr_d"
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4 changes: 2 additions & 2 deletions parm/atm/jcb-prototype_lgetkf.yaml.j2
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@@ -1,7 +1,7 @@
# Use observations for lgetkf
# ---------------------------
app_path_observations: {{PARMgfs}}/gdas/jcb-gdas/observations/atmosphere
app_path_observation_chronicle: {{PARMgfs}}/gdas/jcb-gdas/observation_chronicle/atmosphere
app_path_observations: {{PARMglobal}}/gdas/jcb-gdas/observations/atmosphere
app_path_observation_chronicle: {{PARMglobal}}/gdas/jcb-gdas/observation_chronicle/atmosphere

# Algorithm
# ---------
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4 changes: 2 additions & 2 deletions parm/atm/jcb-prototype_lgetkf_observer.yaml.j2
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@@ -1,7 +1,7 @@
# Use observations for lgetkf
# ---------------------------
app_path_observations: {{PARMgfs}}/gdas/jcb-gdas/observations/atmosphere
app_path_observation_chronicle: {{PARMgfs}}/gdas/jcb-gdas/observation_chronicle/atmosphere
app_path_observations: {{PARMglobal}}/gdas/jcb-gdas/observations/atmosphere
app_path_observation_chronicle: {{PARMglobal}}/gdas/jcb-gdas/observation_chronicle/atmosphere

# Algorithm
# ---------
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4 changes: 2 additions & 2 deletions parm/atm/jcb-prototype_lgetkf_solver.yaml.j2
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@@ -1,7 +1,7 @@
# Use observations for lgetkf
# ---------------------------
app_path_observations: {{PARMgfs}}/gdas/jcb-gdas/observations/atmosphere
app_path_observation_chronicle: {{PARMgfs}}/gdas/jcb-gdas/observation_chronicle/atmosphere
app_path_observations: {{PARMglobal}}/gdas/jcb-gdas/observations/atmosphere
app_path_observation_chronicle: {{PARMglobal}}/gdas/jcb-gdas/observation_chronicle/atmosphere

# Algorithm
# ---------
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10 changes: 5 additions & 5 deletions parm/marine/jcb-base.yaml.j2
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# Search path for model and obs for JCB
# -------------------------------------
algorithm_path: '{{PARMgfs}}/gdas/jcb-algorithms'
app_path_algorithm: '{{PARMgfs}}/gdas/jcb-gdas/algorithm/marine'
app_path_model: '{{PARMgfs}}/gdas/jcb-gdas/model/marine'
app_path_observations: '{{PARMgfs}}/gdas/jcb-gdas/observations/marine'
app_path_observation_chronicle: '{{PARMgfs}}/gdas/jcb-gdas/observation_chronicle/marine'
algorithm_path: '{{PARMglobal}}/gdas/jcb-algorithms'
app_path_algorithm: '{{PARMglobal}}/gdas/jcb-gdas/algorithm/marine'
app_path_model: '{{PARMglobal}}/gdas/jcb-gdas/model/marine'
app_path_observations: '{{PARMglobal}}/gdas/jcb-gdas/observations/marine'
app_path_observation_chronicle: '{{PARMglobal}}/gdas/jcb-gdas/observation_chronicle/marine'


# Places where we deviate from the generic file name of a yaml
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