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2 changes: 1 addition & 1 deletion build.sh
Original file line number Diff line number Diff line change
Expand Up @@ -78,7 +78,7 @@ while getopts "w:t:c:hvdfai" opt; do
done

case ${BUILD_TARGET} in
hera | orion | hercules | wcoss2 | noaacloud | gaeac5 | gaeac6 | ursa )
hera | orion | hercules | wcoss2 | noaacloud | gaeac6 | ursa )
echo "Building GDASApp on $BUILD_TARGET"
source $dir_root/ush/module-setup.sh
module use $dir_root/modulefiles
Expand Down
97 changes: 0 additions & 97 deletions modulefiles/GDAS/gaeac5.intel.lua

This file was deleted.

Original file line number Diff line number Diff line change
Expand Up @@ -58,9 +58,15 @@ jedi increment geometry:
layout:
- {{ atmosphere_layout_x }}
- {{ atmosphere_layout_y }}
{% if atmosphere_variational_increment_type == 'gaussian' %}
npx: {{ atmosphere_npx_anl }}
npy: {{ atmosphere_npy_anl }}
npz: {{ atmosphere_npz_anl }}
{% else %}
npx: {{ atmosphere_npx_his }}
npy: {{ atmosphere_npy_his }}
npz: {{ atmosphere_npz_his }}
{% endif %}
fv3 increment geometry:
fms initialization:
namelist filename: ./fv3jedi/fmsmpp.nml
Expand All @@ -69,9 +75,15 @@ fv3 increment geometry:
layout:
- {{ atmosphere_layout_x }}
- {{ atmosphere_layout_y }}
{% if atmosphere_variational_increment_type == 'gaussian' %}
npx: {{ atmosphere_npx_anl }}
npy: {{ atmosphere_npy_anl }}
npz: {{ atmosphere_npz_anl }}
{% else %}
npx: {{ atmosphere_npx_his }}
npy: {{ atmosphere_npy_his }}
npz: {{ atmosphere_npz_his }}
{% endif %}
members:
- background input:
datapath: ./bkg
Expand Down
Original file line number Diff line number Diff line change
Expand Up @@ -35,6 +35,12 @@ geometry:
layout:
- {{atmosphere_layout_x}}
- {{atmosphere_layout_y}}
{% if atmosphere_variational_increment_type == 'gaussian' %}
npx: {{atmosphere_npx_anl}}
npy: {{atmosphere_npy_anl}}
npz: {{atmosphere_npz_anl}}
{% else %}
npx: {{atmosphere_npx_his}}
npy: {{atmosphere_npy_his}}
npz: {{atmosphere_npz_his}}
{% endif %}
Original file line number Diff line number Diff line change
Expand Up @@ -20,6 +20,6 @@ geometry:
layout:
- {{atmosphere_layout_x}}
- {{atmosphere_layout_y}}
npx: {{atmosphere_npx_his}}
npy: {{atmosphere_npy_his}}
npz: {{atmosphere_npz_his}}
npx: {{atmosphere_npx_anl}}
npy: {{atmosphere_npy_anl}}
npz: {{atmosphere_npz_anl}}
2 changes: 1 addition & 1 deletion sorc/fv3-jedi
2 changes: 1 addition & 1 deletion sorc/ioda
Submodule ioda updated 1 files
+5 −0 src/distribution/Halo.cc
2 changes: 1 addition & 1 deletion sorc/saber
Submodule saber updated 42 files
+3 −0 src/saber/blocks/CMakeLists.txt
+6 −4 src/saber/blocks/SaberBlockChainBase.h
+0 −6 src/saber/blocks/SaberBlockParametersBase.h
+83 −64 src/saber/blocks/SaberEnsembleBlockChain.h
+631 −0 src/saber/blocks/SaberHybridBlockChain.h
+10 −18 src/saber/blocks/SaberParametricBlockChain.cc
+18 −13 src/saber/blocks/SaberParametricBlockChain.h
+8 −5 src/saber/blocks/instantiateBlockChainFactory.h
+0 −8 src/saber/generic/CMakeLists.txt
+0 −20 src/saber/generic/Ensemble.cc
+0 −87 src/saber/generic/Ensemble.h
+0 −26 src/saber/generic/Hybrid.cc
+0 −138 src/saber/generic/Hybrid.h
+20 −20 src/saber/gsi/GSIBlockChain.h
+1 −2 src/saber/gsi/covariance/Covariance.cc
+1 −28 src/saber/gsi/covariance/Covariance.h
+32 −524 src/saber/oops/ErrorCovariance.h
+3 −6 src/saber/oops/ErrorCovarianceParameters.h
+8 −9 src/saber/oops/ErrorCovarianceToolbox.h
+1 −1 src/saber/oops/ProcessPerts.h
+13 −12 src/saber/oops/Utilities.h
+5 −7 test/testinput/dirac_bump_2.yaml
+9 −12 test/testinput/dirac_bump_3.yaml
+6 −8 test/testinput/dirac_bump_4.yaml
+2 −3 test/testinput/dirac_bump_5.yaml
+1 −2 test/testinput/dirac_bump_6.yaml
+7 −10 test/testinput/dirac_ens_both_geom.yaml
+1 −2 test/testinput/dirac_ens_model_geom.yaml
+1 −2 test/testinput/dirac_ens_noloc_4d.yaml
+3 −4 test/testinput/dirac_ens_other_geom_1.yaml
+12 −16 test/testinput/dirac_ens_other_geom_2.yaml
+1 −0 test/testinput/dirac_gsi_geos_global.yaml
+1 −0 test/testinput/dirac_gsi_geos_global_opt_2.yaml
+4 −5 test/testinput/dirac_parallel_hybrid_id.yaml
+7 −8 test/testinput/dirac_parallel_hybrid_ratio_stddev.yaml
+4 −5 test/testinput/dirac_parallel_hybrid_stddev.yaml
+3 −4 test/testinput/dirac_spectralb_covariance_rescaling_1.yaml
+10 −14 test/testinput/dirac_spectralb_gauss_1.yaml
+9 −13 test/testinput/dirac_spectralb_gauss_2.yaml
+2 −3 test/testinput/dirac_spectralb_gauss_vader_3.yaml
+9 −13 test/testinput/dirac_spectralb_gauss_vader_5.yaml
+0 −1 test/testinput/process_perts_diffusion_1.yaml
2 changes: 1 addition & 1 deletion sorc/ufo
Submodule ufo updated 53 files
+19 −11 src/ufo/GeoVaLs.cc
+5 −4 src/ufo/GeoVaLs.h
+2 −12 src/ufo/GeoVaLs.interface.F90
+1 −1 src/ufo/GeoVaLs.interface.h
+3 −1 src/ufo/filters/gnssroonedvarcheck/GNSSROOneDVarCheck.cc
+8 −2 src/ufo/filters/gnssroonedvarcheck/GNSSROOneDVarCheck.interface.F90
+3 −1 src/ufo/filters/gnssroonedvarcheck/GNSSROOneDVarCheck.interface.h
+13 −0 src/ufo/filters/gnssroonedvarcheck/GNSSROOneDVarCheckParameters.h
+41 −33 src/ufo/filters/gnssroonedvarcheck/ufo_gnssroonedvarcheck_do1dvar_mod.f90
+14 −1 src/ufo/filters/gnssroonedvarcheck/ufo_gnssroonedvarcheck_mod.f90
+21 −13 src/ufo/filters/gnssroonedvarcheck/ufo_gnssroonedvarcheck_rootsolv_mod.f90
+2 −0 src/ufo/filters/refractivityonedvarcheck/RefractivityOneDVarCheck.cc
+6 −0 src/ufo/filters/refractivityonedvarcheck/RefractivityOneDVarCheck.interface.F90
+2 −0 src/ufo/filters/refractivityonedvarcheck/RefractivityOneDVarCheck.interface.h
+13 −0 src/ufo/filters/refractivityonedvarcheck/RefractivityOneDVarCheckParameters.h
+28 −22 src/ufo/filters/refractivityonedvarcheck/ufo_refractivityonedvarcheck_do1dvar_mod.f90
+14 −0 src/ufo/filters/refractivityonedvarcheck/ufo_refractivityonedvarcheck_mod.f90
+8 −0 src/ufo/filters/refractivityonedvarcheck/ufo_refractivityonedvarcheck_rootsolv_mod.f90
+3 −1 src/ufo/operators/gnssro/BendMetOffice/ObsGnssroBendMetOffice.cc
+9 −3 src/ufo/operators/gnssro/BendMetOffice/ObsGnssroBendMetOffice.interface.F90
+2 −1 src/ufo/operators/gnssro/BendMetOffice/ObsGnssroBendMetOffice.interface.h
+13 −0 src/ufo/operators/gnssro/BendMetOffice/ObsGnssroBendMetOfficeParameters.h
+3 −1 src/ufo/operators/gnssro/BendMetOffice/ObsGnssroBendMetOfficeTLAD.cc
+9 −3 src/ufo/operators/gnssro/BendMetOffice/ObsGnssroBendMetOfficeTLAD.interface.F90
+1 −1 src/ufo/operators/gnssro/BendMetOffice/ObsGnssroBendMetOfficeTLAD.interface.h
+57 −38 src/ufo/operators/gnssro/BendMetOffice/ufo_gnssro_bendmetoffice_mod.F90
+44 −21 src/ufo/operators/gnssro/BendMetOffice/ufo_gnssro_bendmetoffice_tlad_mod.F90
+3 −1 src/ufo/operators/gnssro/RefMetOffice/ObsGnssroRefMetOffice.cc
+7 −2 src/ufo/operators/gnssro/RefMetOffice/ObsGnssroRefMetOffice.interface.F90
+2 −1 src/ufo/operators/gnssro/RefMetOffice/ObsGnssroRefMetOffice.interface.h
+13 −0 src/ufo/operators/gnssro/RefMetOffice/ObsGnssroRefMetOfficeParameters.h
+3 −1 src/ufo/operators/gnssro/RefMetOffice/ObsGnssroRefMetOfficeTLAD.cc
+7 −2 src/ufo/operators/gnssro/RefMetOffice/ObsGnssroRefMetOfficeTLAD.interface.F90
+2 −1 src/ufo/operators/gnssro/RefMetOffice/ObsGnssroRefMetOfficeTLAD.interface.h
+48 −34 src/ufo/operators/gnssro/RefMetOffice/ufo_gnssro_refmetoffice_mod.F90
+20 −7 src/ufo/operators/gnssro/RefMetOffice/ufo_gnssro_refmetoffice_tlad_mod.F90
+6 −1 src/ufo/operators/groundgnss/ZenithTotalDelayMetOffice/ObsGroundgnssMetOffice.cc
+13 −7 src/ufo/operators/groundgnss/ZenithTotalDelayMetOffice/ObsGroundgnssMetOffice.interface.F90
+2 −1 src/ufo/operators/groundgnss/ZenithTotalDelayMetOffice/ObsGroundgnssMetOffice.interface.h
+13 −0 src/ufo/operators/groundgnss/ZenithTotalDelayMetOffice/ObsGroundgnssMetOfficeParameters.h
+8 −2 src/ufo/operators/groundgnss/ZenithTotalDelayMetOffice/ObsGroundgnssMetOfficeTLAD.cc
+13 −7 src/ufo/operators/groundgnss/ZenithTotalDelayMetOffice/ObsGroundgnssMetOfficeTLAD.interface.F90
+2 −1 src/ufo/operators/groundgnss/ZenithTotalDelayMetOffice/ObsGroundgnssMetOfficeTLAD.interface.h
+50 −28 src/ufo/operators/groundgnss/ZenithTotalDelayMetOffice/ufo_groundgnss_metoffice_mod.F90
+99 −74 src/ufo/operators/groundgnss/ZenithTotalDelayMetOffice/ufo_groundgnss_metoffice_tlad_mod.F90
+4 −3 src/ufo/operators/groundgnss/ZenithTotalDelayMetOffice/ufo_groundgnss_metoffice_utils_mod.F90
+0 −3 src/ufo/ufo_constants_mod.F90
+37 −29 src/ufo/ufo_geovals_mod.F90
+4 −0 src/ufo/utils/Constants.h
+30 −16 src/ufo/utils/RefractivityCalculator.F90
+40 −0 test/testinput/unit_tests/operators/CMakeLists.txt
+60 −0 test/testinput/unit_tests/operators/gnssrobendmetoffice_refractivity_changes.yaml
+60 −0 test/testinput/unit_tests/operators/gnssrorefmetoffice_refractivity_changes.yaml
6 changes: 0 additions & 6 deletions ush/detect_machine.sh
Original file line number Diff line number Diff line change
Expand Up @@ -21,9 +21,6 @@ case $(hostname -f) in
dlogin0[1-9].dogwood.wcoss2.ncep.noaa.gov) MACHINE_ID=wcoss2 ;; ### dogwood01-9
dlogin10.dogwood.wcoss2.ncep.noaa.gov) MACHINE_ID=wcoss2 ;; ### dogwood10

gaea5[1-8]) MACHINE_ID=gaeac5 ;; ### gaea51-58
gaea5[1-8].ncrc.gov) MACHINE_ID=gaeac5 ;; ### gaea51-58

gaea6[1-8]) MACHINE_ID=gaeac6 ;; ### gaea61-68
gaea6[1-8].ncrc.gov) MACHINE_ID=gaeac6 ;; ### gaea61-68

Expand Down Expand Up @@ -93,9 +90,6 @@ elif [[ -d /work ]]; then
else
MACHINE_ID=orion
fi
elif [[ -d /gpfs/f5 ]]; then
# We are on GAEAC5.
MACHINE_ID=gaeac5
elif [[ -d /gpfs/f6 ]]; then
# We are on GAEAC6.
MACHINE_ID=gaeac6
Expand Down