2.1.0 eddy4R refactor

• Refactor planar fit to have a separate workflow to derive pfit coeficients
• Wrap.flux refactoring with single pass flux derivation
• Wavelet high-frequency correction updates
  • Now better aligns with Nordbo and Katul (2013) methods and MATLAB code. Main changes include:
    • Changed approach from using continuous wavelet transform to discrete wavelet
    • Changed wavelet coefficient weighting and adjustments to better match methods described in NK12 paper and code
• Validation updates to ensure clean validations applied
• Added lag time as metadata to output files
• Added singleton logging
• Added ITC and stationarity quality indicator flags to the qfqm table of dp04 flux data products.
• Created a new definition function to determine and adjust time shifts in isoCo2 dp01 and the associated qfqm (eddy4R.stor::def.shft.time.isoCo2.R).
• Created a new definition function to determine and adjust time shifts in isoH2o dp01 and the associated qfqm (eddy4R.stor::def.shft.time.isoH2o.R).
• rc2:
  • storage interpolation time update
  • isoH2o time correction bug fix, also deal with faulty valve data
  • runLocal argument added to stackEddy calls
• rc3:
  • fixed issues when time correction cannot be determined due to NaN in data
• rc4:
  • fixed issue with AngNedZaxs being a character variable when rotating soni data
• rc5:
  • adding dp04 qfSciRevw update
• rc6:
  • Fixed issues in tickets NSE-10984, 10987, and 10992 related to def.shft.time.isoCo2.
    -Fixed issues in ticket NSE-10983 related to updating the failsafe to prevent breaking the zoo::na.approx function in the dp02 ECSE calculation.
    -Fixed issues in ticket NSE-10982 related to updating the data, qfqm, and uncertainty calculations for dp01 to prevent breaking when the validation occurs between two days and the start and end times cannot be determined.

eddy4R 1.3.1: Aligning release strategy between NEON-FIU-algorithm and eddy4R

Aligning release strategy between NEON-FIU-algorithm and eddy4R. The 1.3.1 release on NEON-FIU-algorithm was used for the 2023 NEON data release.

packages

• eddy4R.base

  • def.irga.vali.cor - Updated the slope filter to allow for values not evenly centered around 1
  • def.irga.vali.thsh.R – updating data check to fail if one list is entirely NA, or if both lists have only one value
  • wrap.irga.vali.R - setting corrected data to NaN if qfEvalThsh is -1 to prevent bad data passing through if the evaluation doesn't run
  • def.hdf5.wrte.dp01.api.R - update L1 IS reingest to use SOM package API download function
  • wrap.dp01.ecse.R - changed CritTime (flush time) and input aggregation time for isoCo2

• eddy4R.stor

• eddy4R.qaqc

  • wrap.dp01.qfqm.ecse.R - changed CritTime (flush time) and input aggregation time for isoCo2

eddy4R-Docker 1.0.1

Accompanying the manuscript:
Metzger, S., E. Ayres, D. Durden, C. Florian, R. Lee, C. Lunch, H. Luo, N. Pingintha-Durden, J.A. Roberti, M. SanClements, C. Sturtevant, K. Xu, and R.C. Zulueta, 2019: From NEON Field Sites to Data Portal: A Community Resource for Surface–Atmosphere Research Comes Online. Bull. Amer. Meteor. Soc., 100, 2305–2325, https://doi.org/10.1175/BAMS-D-17-0307.1.

• this patch release triggers DOI creation on Zenodo https://doi.org/10.5281/zenodo.596557

• code contents are identical to eddy4R-Docker 1.0.0

eddy4R-Docker 1.0.0

Accompanying the manuscript:
Metzger, S., E. Ayres, D. Durden, C. Florian, R. Lee, C. Lunch, H. Luo, N. Pingintha-Durden, J.A. Roberti, M. SanClements, C. Sturtevant, K. Xu, and R.C. Zulueta, 2019: From NEON Field Sites to Data Portal: A Community Resource for Surface–Atmosphere Research Comes Online. Bull. Amer. Meteor. Soc., 100, 2305–2325, https://doi.org/10.1175/BAMS-D-17-0307.1

eddy4R-Docker 0.2.0

Accompanying the manuscript "eddy4R 0.2.0: A DevOps model for community-extensible processing and analysis of eddy-covariance data based on R, Git, Docker and HDF5" in Geoscientific Model Development (GMD) http://www.geosci-model-dev-discuss.net/gmd-2016-318/.

initial release

Accompanying the manuscript "eddy4R: A community-extensible processing, analysis and modeling framework for eddy-covariance data based on R, Git, Docker and HDF5" in Geoscientific Model Development Discussions (GMDD) http://www.geosci-model-dev-discuss.net/discussion_papers.html.