-
Notifications
You must be signed in to change notification settings - Fork 0
Commit
This commit does not belong to any branch on this repository, and may belong to a fork outside of the repository.
- Loading branch information
Showing
29 changed files
with
4,063 additions
and
2,301 deletions.
There are no files selected for viewing
103 changes: 0 additions & 103 deletions
103
RAnalysis/Output/Popgen/parentage_sequoia/F0BF1O/F0BF1O_final.csv
This file was deleted.
Oops, something went wrong.
34 changes: 0 additions & 34 deletions
34
RAnalysis/Output/Popgen/parentage_sequoia/F1BF2O/High/F1BF2O_High_final.csv
This file was deleted.
Oops, something went wrong.
461 changes: 0 additions & 461 deletions
461
RAnalysis/Output/Popgen/parentage_sequoia/F1BF2O/High/F1BF2O_High_raw.csv
This file was deleted.
Oops, something went wrong.
461 changes: 0 additions & 461 deletions
461
RAnalysis/Output/Popgen/parentage_sequoia/F1BF2O/High/F1BF2O_High_summary.csv
This file was deleted.
Oops, something went wrong.
33 changes: 0 additions & 33 deletions
33
RAnalysis/Output/Popgen/parentage_sequoia/F1BF2O/Low/F1BF2O_Low_final.csv
This file was deleted.
Oops, something went wrong.
48 changes: 0 additions & 48 deletions
48
RAnalysis/Output/Popgen/parentage_sequoia/F1BF2O/Moderate/F1BF2O_Mod_final.csv
This file was deleted.
Oops, something went wrong.
102 changes: 102 additions & 0 deletions
102
RAnalysis/Output/Popgen/pedigree/F0BF1O/F0BF1O_final.csv
Large diffs are not rendered by default.
Oops, something went wrong.
This file contains bidirectional Unicode text that may be interpreted or compiled differently than what appears below. To review, open the file in an editor that reveals hidden Unicode characters.
Learn more about bidirectional Unicode characters
| Original file line number | Diff line number | Diff line change |
|---|---|---|
| @@ -0,0 +1,124 @@ | ||
| "id","fid","mid","sex" | ||
| "adapter_trim.F0-B1.bam","0","0",0 | ||
| "adapter_trim.F0-B10.bam","0","0",0 | ||
| "adapter_trim.F0-B11.bam","0","0",0 | ||
| "adapter_trim.F0-B13.bam","0","0",0 | ||
| "adapter_trim.55.bam","adapter_trim.F0-B13.bam","adapter_trim.F0-B11.bam",0 | ||
| "adapter_trim.F0-B14.bam","0","0",0 | ||
| "adapter_trim.254.bam","adapter_trim.F0-B14.bam","adapter_trim.F0-B11.bam",0 | ||
| "adapter_trim.F0-B15.bam","0","0",0 | ||
| "adapter_trim.351.bam","adapter_trim.F0-B10.bam","adapter_trim.F0-B15.bam",0 | ||
| "adapter_trim.F0-B16.bam","0","0",0 | ||
| "adapter_trim.F0-B17.bam","0","0",0 | ||
| "adapter_trim.5.bam","adapter_trim.F0-B10.bam","adapter_trim.F0-B17.bam",0 | ||
| "adapter_trim.303.bam","adapter_trim.F0-B1.bam","adapter_trim.F0-B17.bam",0 | ||
| "adapter_trim.253.bam","adapter_trim.F0-B10.bam","adapter_trim.F0-B17.bam",0 | ||
| "adapter_trim.153.bam","adapter_trim.F0-B14.bam","adapter_trim.F0-B17.bam",0 | ||
| "adapter_trim.F0-B18.bam","0","0",0 | ||
| "adapter_trim.F0-B2.bam","0","0",0 | ||
| "adapter_trim.F0-B20.bam","0","0",0 | ||
| "adapter_trim.F0-B21.bam","0","0",0 | ||
| "adapter_trim.352.bam","adapter_trim.F0-B11.bam","adapter_trim.F0-B21.bam",0 | ||
| "adapter_trim.F0-B22.bam","0","0",0 | ||
| "adapter_trim.201.bam","adapter_trim.F0-B10.bam","adapter_trim.F0-B22.bam",0 | ||
| "adapter_trim.F0-B25.bam","0","0",0 | ||
| "adapter_trim.F0-B26.bam","0","0",0 | ||
| "adapter_trim.304.bam","adapter_trim.F0-B26.bam","adapter_trim.F0-B2.bam",0 | ||
| "adapter_trim.251.bam","adapter_trim.F0-B26.bam","adapter_trim.F0-B22.bam",0 | ||
| "adapter_trim.101.bam","adapter_trim.F0-B26.bam","adapter_trim.F0-B18.bam",0 | ||
| "adapter_trim.F0-B27.bam","0","0",0 | ||
| "adapter_trim.F0-B3.bam","0","0",0 | ||
| "adapter_trim.204.bam","adapter_trim.F0-B3.bam","adapter_trim.F0-B18.bam",0 | ||
| "adapter_trim.103.bam","adapter_trim.F0-B20.bam","adapter_trim.F0-B3.bam",0 | ||
| "adapter_trim.F0-B4.bam","0","0",0 | ||
| "adapter_trim.54.bam","adapter_trim.F0-B4.bam","adapter_trim.F0-B25.bam",0 | ||
| "adapter_trim.301.bam","adapter_trim.F0-B16.bam","adapter_trim.F0-B4.bam",0 | ||
| "adapter_trim.F0-B5.bam","0","0",0 | ||
| "adapter_trim.F0-B6.bam","0","0",0 | ||
| "adapter_trim.353.bam","adapter_trim.F0-B14.bam","adapter_trim.F0-B6.bam",0 | ||
| "adapter_trim.3.bam","adapter_trim.F0-B27.bam","adapter_trim.F0-B6.bam",0 | ||
| "adapter_trim.F0-B7.bam","0","0",0 | ||
| "adapter_trim.53.bam","adapter_trim.F0-B10.bam","adapter_trim.F0-B7.bam",0 | ||
| "adapter_trim.4.bam","adapter_trim.F0-B10.bam","adapter_trim.F0-B7.bam",0 | ||
| "adapter_trim.203.bam","adapter_trim.F0-B10.bam","adapter_trim.F0-B7.bam",0 | ||
| "adapter_trim.104.bam","adapter_trim.F0-B7.bam","adapter_trim.F0-B21.bam",0 | ||
| "adapter_trim.F0-B9.bam","0","0",0 | ||
| "adapter_trim.155.bam","adapter_trim.F0-B16.bam","adapter_trim.F0-B9.bam",0 | ||
| "adapter_trim.154.bam","adapter_trim.F0-B20.bam","adapter_trim.F0-B9.bam",0 | ||
| "adapter_trim.F1-B1-pH75.bam","adapter_trim.F0-B27.bam","adapter_trim.F0-B9.bam",0 | ||
| "adapter_trim.F1-B1-pH8.bam","adapter_trim.F0-B10.bam","adapter_trim.F0-B25.bam",0 | ||
| "adapter_trim.F1-B10-pH8.bam","adapter_trim.F0-B20.bam","adapter_trim.F0-B7.bam",0 | ||
| "adapter_trim.F1-B11-pH75.bam","adapter_trim.F0-B20.bam","adapter_trim.F0-B5.bam",0 | ||
| "adapter_trim.F1-B11-pH8.bam","adapter_trim.F0-B14.bam","adapter_trim.F0-B2.bam",0 | ||
| "adapter_trim.F1-B12-pH75.bam","adapter_trim.F0-B26.bam","adapter_trim.F0-B3.bam",0 | ||
| "adapter_trim.F1-B14-pH75.bam","adapter_trim.F0-B11.bam","adapter_trim.F0-B22.bam",0 | ||
| "adapter_trim.F1-B15-pH8.bam","adapter_trim.F0-B3.bam","adapter_trim.F0-B6.bam",0 | ||
| "adapter_trim.F1-B16-pH75.bam","adapter_trim.F0-B3.bam","adapter_trim.F0-B5.bam",0 | ||
| "adapter_trim.F1-B17-pH75.bam","adapter_trim.F0-B13.bam","adapter_trim.F0-B1.bam",0 | ||
| "adapter_trim.F1-B20-pH75.bam","adapter_trim.F0-B10.bam","adapter_trim.F0-B6.bam",0 | ||
| "adapter_trim.F1-B20-pH8.bam","adapter_trim.F0-B20.bam","adapter_trim.F0-B3.bam",0 | ||
| "adapter_trim.F1-B21-pH75.bam","adapter_trim.F0-B10.bam","adapter_trim.F0-B25.bam",0 | ||
| "adapter_trim.F1-B21-pH8.bam","adapter_trim.F0-B14.bam","adapter_trim.F0-B2.bam",0 | ||
| "adapter_trim.F1-B25-pH8.bam","adapter_trim.F0-B20.bam","adapter_trim.F0-B22.bam",0 | ||
| "adapter_trim.F1-B3-pH8.bam","adapter_trim.F0-B16.bam","adapter_trim.F0-B1.bam",0 | ||
| "adapter_trim.F1-B4-pH75.bam","adapter_trim.F0-B20.bam","adapter_trim.F0-B2.bam",0 | ||
| "adapter_trim.F1-B4-pH8.bam","adapter_trim.F0-B2.bam","adapter_trim.F0-B6.bam",0 | ||
| "adapter_trim.F1-B5-pH8.bam","adapter_trim.F0-B26.bam","adapter_trim.F0-B9.bam",0 | ||
| "adapter_trim.F1-B6-pH75.bam","adapter_trim.F0-B10.bam","adapter_trim.F0-B25.bam",0 | ||
| "adapter_trim.F1-B7-pH8.bam","adapter_trim.F0-B16.bam","adapter_trim.F0-B2.bam",0 | ||
| "adapter_trim.F1-B8-pH75.bam","adapter_trim.F0-B20.bam","adapter_trim.F0-B21.bam",0 | ||
| "adapter_trim.F1-B8-pH8.bam","adapter_trim.F0-B2.bam","adapter_trim.F0-B25.bam",0 | ||
| "adapter_trim.F1-B9-pH75.bam","adapter_trim.F0-B20.bam","adapter_trim.F0-B22.bam",0 | ||
| "adapter_trim.F1-B9-pH8.bam","adapter_trim.F0-B4.bam","adapter_trim.F0-B25.bam",0 | ||
| "adapter_trim.F1-J105-pH8.bam","adapter_trim.F0-B10.bam","adapter_trim.F0-B3.bam",0 | ||
| "adapter_trim.F1-J106-pH8.bam","adapter_trim.F0-B4.bam","adapter_trim.F0-B25.bam",0 | ||
| "adapter_trim.F1-J110-pH8.bam","adapter_trim.F0-B26.bam","adapter_trim.F0-B15.bam",0 | ||
| "adapter_trim.F1-J111-pH8.bam","adapter_trim.F0-B7.bam","adapter_trim.F0-B18.bam",0 | ||
| "adapter_trim.F1-J112-pH8.bam","adapter_trim.F0-B26.bam","adapter_trim.F0-B11.bam",0 | ||
| "adapter_trim.F1-J113-pH8.bam","adapter_trim.F0-B2.bam","adapter_trim.F0-B9.bam",0 | ||
| "adapter_trim.F1-J114-pH8.bam","adapter_trim.F0-B14.bam","adapter_trim.F0-B2.bam",0 | ||
| "adapter_trim.F1-J13-pH8.bam","adapter_trim.F0-B3.bam","adapter_trim.F0-B6.bam",0 | ||
| "adapter_trim.F1-J14-pH8.bam","adapter_trim.F0-B20.bam","adapter_trim.F0-B11.bam",0 | ||
| "adapter_trim.F1-J157-pH8.bam","adapter_trim.F0-B14.bam","adapter_trim.F0-B1.bam",0 | ||
| "adapter_trim.F1-J158-pH8.bam","adapter_trim.F0-B7.bam","adapter_trim.F0-B15.bam",0 | ||
| "adapter_trim.F1-J16-pH8.bam","adapter_trim.F0-B2.bam","adapter_trim.F0-B9.bam",0 | ||
| "adapter_trim.F1-J160-pH8.bam","adapter_trim.F0-B3.bam","adapter_trim.F0-B18.bam",0 | ||
| "adapter_trim.F1-J161-pH8.bam","adapter_trim.F0-B14.bam","adapter_trim.F0-B17.bam",0 | ||
| "adapter_trim.F1-J162-pH8.bam","adapter_trim.F0-B13.bam","adapter_trim.F0-B4.bam",0 | ||
| "adapter_trim.F1-J163-pH8.bam","adapter_trim.F0-B16.bam","adapter_trim.F0-B18.bam",0 | ||
| "adapter_trim.F1-J164-pH8.bam","adapter_trim.F0-B16.bam","adapter_trim.F0-B11.bam",0 | ||
| "adapter_trim.F1-J17-pH8.bam","adapter_trim.F0-B11.bam","adapter_trim.F0-B18.bam",0 | ||
| "adapter_trim.F1-J18-pH8.bam","adapter_trim.F0-B14.bam","adapter_trim.F0-B15.bam",0 | ||
| "adapter_trim.F1-J205-pH75.bam","adapter_trim.F0-B7.bam","adapter_trim.F0-B18.bam",0 | ||
| "adapter_trim.F1-J206-pH75.bam","adapter_trim.F0-B11.bam","adapter_trim.F0-B15.bam",0 | ||
| "adapter_trim.F1-J207-pH75.bam","adapter_trim.F0-B20.bam","adapter_trim.F0-B4.bam",0 | ||
| "adapter_trim.F1-J209-pH75.bam","adapter_trim.F0-B2.bam","adapter_trim.F0-B5.bam",0 | ||
| "adapter_trim.F1-J210-pH75.bam","adapter_trim.F0-B14.bam","adapter_trim.F0-B3.bam",0 | ||
| "adapter_trim.F1-J212-pH75.bam","adapter_trim.F0-B13.bam","adapter_trim.F0-B22.bam",0 | ||
| "adapter_trim.F1-J255-pH75.bam","adapter_trim.F0-B10.bam","adapter_trim.F0-B1.bam",0 | ||
| "adapter_trim.F1-J258-pH75.bam","adapter_trim.F0-B11.bam","adapter_trim.F0-B18.bam",0 | ||
| "adapter_trim.F1-J259-pH75.bam","adapter_trim.F0-B14.bam","adapter_trim.F0-B4.bam",0 | ||
| "adapter_trim.F1-J261-pH75.bam","adapter_trim.F0-B26.bam","adapter_trim.F0-B1.bam",0 | ||
| "adapter_trim.F1-J262-pH75.bam","adapter_trim.F0-B7.bam","adapter_trim.F0-B5.bam",0 | ||
| "adapter_trim.F1-J263-pH75.bam","adapter_trim.F0-B13.bam","adapter_trim.F0-B5.bam",0 | ||
| "adapter_trim.F1-J264-pH75.bam","adapter_trim.F0-B27.bam","adapter_trim.F0-B25.bam",0 | ||
| "adapter_trim.F1-J306-pH75.bam","adapter_trim.F0-B7.bam","adapter_trim.F0-B18.bam",0 | ||
| "adapter_trim.F1-J307-pH75.bam","adapter_trim.F0-B14.bam","adapter_trim.F0-B18.bam",0 | ||
| "adapter_trim.F1-J308-pH75.bam","adapter_trim.F0-B16.bam","adapter_trim.F0-B1.bam",0 | ||
| "adapter_trim.F1-J311-pH75.bam","adapter_trim.F0-B11.bam","adapter_trim.F0-B9.bam",0 | ||
| "adapter_trim.F1-J312-pH75.bam","adapter_trim.F0-B26.bam","adapter_trim.F0-B25.bam",0 | ||
| "adapter_trim.F1-J313-pH75.bam","adapter_trim.F0-B4.bam","adapter_trim.F0-B5.bam",0 | ||
| "adapter_trim.F1-J314-pH75.bam","adapter_trim.F0-B10.bam","adapter_trim.F0-B7.bam",0 | ||
| "adapter_trim.F1-J356-pH75.bam","adapter_trim.F0-B7.bam","adapter_trim.F0-B21.bam",0 | ||
| "adapter_trim.F1-J361-pH75.bam","adapter_trim.F0-B20.bam","adapter_trim.F0-B5.bam",0 | ||
| "adapter_trim.F1-J362-pH75.bam","adapter_trim.F0-B20.bam","adapter_trim.F0-B1.bam",0 | ||
| "adapter_trim.F1-J363-pH75.bam","adapter_trim.F0-B3.bam","adapter_trim.F0-B25.bam",0 | ||
| "adapter_trim.F1-J364-pH75.bam","adapter_trim.F0-B13.bam","adapter_trim.F0-B11.bam",0 | ||
| "adapter_trim.F1-J372-pH75.bam","adapter_trim.F0-B14.bam","adapter_trim.F0-B1.bam",0 | ||
| "adapter_trim.F1-J6-pH8.bam","adapter_trim.F0-B16.bam","adapter_trim.F0-B4.bam",0 | ||
| "adapter_trim.F1-J65-pH8.bam","adapter_trim.F0-B2.bam","adapter_trim.F0-B25.bam",0 | ||
| "adapter_trim.F1-J66-pH8.bam","adapter_trim.F0-B16.bam","adapter_trim.F0-B7.bam",0 | ||
| "adapter_trim.F1-J67-pH8.bam","adapter_trim.F0-B2.bam","adapter_trim.F0-B25.bam",0 | ||
| "adapter_trim.F1-J68-pH8.bam","adapter_trim.F0-B7.bam","adapter_trim.F0-B18.bam",0 | ||
| "adapter_trim.F1-J69-pH8.bam","adapter_trim.F0-B3.bam","adapter_trim.F0-B18.bam",0 | ||
| "adapter_trim.F1-J70-pH8.bam","adapter_trim.F0-B20.bam","adapter_trim.F0-B9.bam",0 |
File renamed without changes.
File renamed without changes.
Oops, something went wrong.