Fix documentation links

README.md

@@ -25,7 +25,7 @@ The Ecological Metadata Language (EML) defines a comprehensive vocabulary and a
 - **EML 2.2.0 Specification**
     - [Read it online](https://eml.ecoinformatics.org/)
     - [Browse the interactive EML schema documentation](https://eml.ecoinformatics.org/schema)
-    - [Download EML](http://knb.ecoinformatics.org/software/dist/eml-2.2.0.tar.gz) - The download consists of the
+    - [Download EML](https://knb.ecoinformatics.org/software/dist/eml-2.2.0.tar.gz) - The download consists of the
       EML modules, described in the [XML Schema](http://www.w3.org/XML/Schema) language.
       In addition, the full documentation on the modules is provided in HTML format.
     - [Changes to EML in version 2.2.0](https://eml.ecoinformatics.org/whats-new-in-eml-2-2-0.html)
@@ -103,12 +103,12 @@ EML was originally developed by Matthew Jones at NCEAS based on a report by the
 
 The following versions are still available for reference purposes, although they have been superseded by the current version (2.2.0).  Please make every effort to use the current version.
 
-- [EML 2.2.0](http://knb.ecoinformatics.org/software/dist/eml-2.2.0.tar.gz)
-- [EML 2.1.1](http://knb.ecoinformatics.org/software/dist/eml-2.1.1.tar.gz)
-- [EML 2.1.0](http://knb.ecoinformatics.org/software/dist/eml-2.1.0.tar.gz)
-- [EML 2.0.1](http://knb.ecoinformatics.org/software/dist/eml-2.0.1.tar.gz)
-- [EML 2.0.0](http://knb.ecoinformatics.org/software/dist/eml-2.0.0.tar.gz)
-- [EML 1.4.1](http://knb.ecoinformatics.org/software/dist/eml-1.4.1.tar.gz)
+- [EML 2.2.0](https://knb.ecoinformatics.org/software/dist/eml-2.2.0.tar.gz)
+- [EML 2.1.1](https://knb.ecoinformatics.org/software/dist/eml-2.1.1.tar.gz)
+- [EML 2.1.0](https://knb.ecoinformatics.org/software/dist/eml-2.1.0.tar.gz)
+- [EML 2.0.1](https://knb.ecoinformatics.org/software/dist/eml-2.0.1.tar.gz)
+- [EML 2.0.0](https://knb.ecoinformatics.org/software/dist/eml-2.0.0.tar.gz)
+- [EML 1.4.1](https://knb.ecoinformatics.org/software/dist/eml-1.4.1.tar.gz)
 
 ## Copyright and License
 Copyright: 1997-2019 Regents of the University of California

docs/eml-210info.md

@@ -461,7 +461,7 @@ Converting EML documents from v2.0.0/1 to v2.1.0
 
 **A:** An XSL stylesheet is provided with the EML Utilities to convert
 valid EML 2.0-series documents to EML 2.1.0 (see
-<http://knb.ecoinformatics.org/software/eml/>). The stylesheet performs
+<https://knb.ecoinformatics.org/software/eml/>). The stylesheet performs
 basic tasks to create a template EML 2.1.0 document (below). For more
 information, see the Utilities documentation.
 
@@ -492,7 +492,7 @@ and data types are not detectable by a stylesheet. Document authors are
 advised to check the validity of their new EML 2.1.0 after
 transformation. EML instance documents can be validated in these ways:
 
-1.  With the [online EML Parser](http://knb.ecoinformatics.org/emlparser/ ). The online
+1.  With the [online EML Parser](https://knb.ecoinformatics.org/emlparser/). The online
     parser will validate all versions of EML.
 
 2.  Using the Parser that comes with EML. To execute it, change into the

docs/eml-220info.md

@@ -369,7 +369,7 @@ external identifiers, e.g., to a code from a system like ITIS or WoRMS.
 ## How can I convert from earlier versions of EML?
 
 An XSL stylesheet is provided with the EML Utilities to convert valid EML
-2.1-series documents to EML 2.2.0 (see <http://knb.ecoinformatics.org/software/eml/>). 
+2.1-series documents to EML 2.2.0 (see <https://knb.ecoinformatics.org/software/eml/>). 
 The stylesheet performs basic tasks to create a template EML 2.2.0 document. 
 For more information, see the Utilities documentation.
 

docs/eml-faq.md

@@ -83,7 +83,7 @@ discovery, access, integration and synthesis.
 
 **A:** All the documents associated with the EML development effort are
 available via the project web server at
-<http://knb.ecoinformatics.org/software/eml/>. These projects are
+<https://knb.ecoinformatics.org/tools/eml>. These projects are
 licensed under the GPL (Gnu Public License) agreement and can be freely
 distributed and modified.
 
@@ -93,12 +93,12 @@ XML editor. How then do you get content into EML?
 
 **A:** The Knowledge Network for Biocomplexity project has developed a
 software client specifically to address this need.
-[Morpho](http://knb.ecoinformatics.org/software/) (after the butterfly
+[Morpho](https://knb.ecoinformatics.org/tools/morpho) (after the butterfly
 genus) is written in java (making portable across computer platforms)
 combines an easy to use interface to EML with a number of tools to make
 it easier for ecologists to document data. These include a
 reverse-engineering wizard. Morpho is available from
-<http://knb.ecoinformatics.org/software>. Morpho currently supports the
+<https://knb.ecoinformatics.org/tools/morpho>. Morpho currently supports the
 EML 2.1.0 release.
 
 **Q:** EML contains provisions for communication. Is it possible to
@@ -139,7 +139,7 @@ metadata into EML depending on what form your existing metadata take.
         into EML compliant XML.
 
     3.  Use an special purpose XML editor that generates EML (
-        [Morpho](http://knb.ecoinformatics.org/software) or
+        [Morpho](https://knb.ecoinformatics.org/tools/morpho) or
         [Xylographa](http://ces.asu.edu/bdi/Subjects/xylographa) ) and
         manually retype the metadata.
 
@@ -185,7 +185,7 @@ metadata into EML depending on what form your existing metadata take.
 
 NOTE: In each of the cases it may be necessary to add some additional
 metadata in order to produce EML compliant documents.
-[Morpho](http://knb.ecoinformatics.org/software) will automatically
+[Morpho](https://knb.ecoinformatics.org/tools/morpho) will automatically
 create EML compliant metadata either by adding it for you or indicating
 that certain fields are mandatory.
 
@@ -195,7 +195,7 @@ query them or use them for data management?
 
 **A:** EML is an exchange standard for communication of metadata but it
 can be used as the framework for a data management system.
-[Metacat](http://knb.ecoinformatics.org/software) is a multipurpose XML
+[Metacat](https://knb.ecoinformatics.org/tools/metacat) is a multipurpose XML
 metadata and data repository that is optimized for use with EML. If you
 store your metadata in a relational database management system or plan
 to then there are also solutions.