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v1.0.1 #79

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merged 5 commits into from
Oct 27, 2023
Merged

v1.0.1 #79

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c53b236
chore: update gitignore
biodavidjm Oct 26, 2023
be7023f
update: new plexedpiper version 0.4.2
biodavidjm Oct 26, 2023
27c0460
update: add pipeline output to msgfplus pipeline
biodavidjm Oct 26, 2023
ecebc89
Merge pull request #78 from MoTrPAC/adjustments-outputs
mihirsamdarshi Oct 26, 2023
58374ef
bump version 1.0.1
biodavidjm Oct 26, 2023
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1 change: 1 addition & 0 deletions .gitignore
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Expand Up @@ -16,3 +16,4 @@ pyenv372
.python-version
.Rproj.user
scripts/scripts.Rproj
scripts/.Rhistory
2 changes: 1 addition & 1 deletion dockerfiles/Dockerfile.plexedpiper
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Expand Up @@ -13,6 +13,6 @@ RUN apt-get update \

# hadolint ignore=DL3059
RUN R -e 'install.packages("devtools")' \
&& R -e 'remotes::install_github("PNNL-Comp-Mass-Spec/[email protected].1", build_vignettes = FALSE)' \
&& R -e 'remotes::install_github("PNNL-Comp-Mass-Spec/[email protected].2", build_vignettes = FALSE)' \
&& R -e 'install.packages("optparse")' \
&& R -e 'install.packages("purrr")'
7 changes: 6 additions & 1 deletion wdl/proteomics_msgfplus.wdl
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Expand Up @@ -3,7 +3,7 @@ version 1.0
workflow proteomics_msgfplus {
meta {
author: "David Jimenez-Morales"
version: "v1.0.0"
version: "v1.0.1"

task_labels: {
msgf_sequences: {
Expand Down Expand Up @@ -267,6 +267,11 @@ workflow proteomics_msgfplus {
isPTM = isPTM
}
}

output {
File? results_rii = wrapper_pp.results_rii
File? results_ratio = wrapper_pp.results_ratio
}
}

task msgf_sequences {
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