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Make MATLAB workshop scripts runnable from repo root on any machine. #1

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Make MATLAB workshop scripts runnable from repo root on any machine. #1

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13 changes: 7 additions & 6 deletions matlab_scripts/term_lab.m
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Original file line number Diff line number Diff line change
Expand Up @@ -3,11 +3,6 @@

%% boiler plate

%%% add wsindy_obj_base to path
scriptsdir = fileparts(matlab.desktop.editor.getActiveFilename);
repodir = fileparts(scriptsdir);
addpath(genpath(repodir));

%%% restart with same rng seed or clear workspace and start from scratch
restart_run = false;
if ~restart_run
Expand All @@ -16,12 +11,18 @@
clear;
end

%%% add wsindy_obj_base to path (library only — avoids shadowing duplicate scripts)
scriptdir = fileparts(mfilename('fullpath'));
repodir = fileparts(scriptdir);
wsindy_lib = fullfile(repodir, 'libs', 'wsindy_obj_base');
addpath(wsindy_lib);

%%% consolidate figures
set(0,'DefaultFigureWindowStyle','docked')

%% load data

dr = 'pde_data/';
dr = [fullfile(wsindy_lib, 'pde_data'), filesep];
pde_name = 'NLS.mat';
load([dr,pde_name],'U_exact','lhs','true_nz_weights','xs')

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9 changes: 5 additions & 4 deletions matlab_scripts/wendy_ode_script.m
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Original file line number Diff line number Diff line change
Expand Up @@ -11,10 +11,11 @@

%% boiler plate

%%% add wsindy_obj_base to path
scriptsdir = fileparts(matlab.desktop.editor.getActiveFilename);
repodir = fileparts(scriptsdir);
addpath(genpath(repodir));
%%% add wsindy_obj_base to path (library only — avoids shadowing duplicate scripts)
scriptdir = fileparts(mfilename('fullpath'));
repodir = fileparts(scriptdir);
wsindy_lib = fullfile(repodir, 'libs', 'wsindy_obj_base');
addpath(wsindy_lib);

%%% restart with same rng seed or clear workspace and start from scratch
restart_run = true;
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9 changes: 5 additions & 4 deletions matlab_scripts/wsindy_ode_script.m
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Original file line number Diff line number Diff line change
Expand Up @@ -20,10 +20,11 @@
%%% consolidate figures
set(0,'DefaultFigureWindowStyle','docked')

%%% add wsindy_obj_base to path
scriptsdir = fileparts(matlab.desktop.editor.getActiveFilename);
repodir = fileparts(scriptsdir);
addpath(genpath(repodir));
%%% add wsindy_obj_base to path (library only — avoids shadowing duplicate scripts)
scriptdir = fileparts(mfilename('fullpath'));
repodir = fileparts(scriptdir);
wsindy_lib = fullfile(repodir, 'libs', 'wsindy_obj_base');
addpath(wsindy_lib);

%% load data

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15 changes: 8 additions & 7 deletions matlab_scripts/wsindy_pde_script.m
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Original file line number Diff line number Diff line change
Expand Up @@ -21,16 +21,17 @@
%%% consolidate figures
set(0,'DefaultFigureWindowStyle','docked')

%%% add wsindy_obj_base to path
scriptsdir = fileparts(matlab.desktop.editor.getActiveFilename);
repodir = fileparts(scriptsdir);
addpath(genpath(repodir));
%%% add wsindy_obj_base to path (library only — avoids shadowing duplicate scripts)
scriptdir = fileparts(mfilename('fullpath'));
repodir = fileparts(scriptdir);
wsindy_lib = fullfile(repodir, 'libs', 'wsindy_obj_base');
addpath(wsindy_lib);

%% parameters

%%% available PDE data
% dr = 'pde_data/';
dr = '/home/danielmessenger/data/';
dr = [fullfile(wsindy_lib, 'pde_data'), filesep];
% dr = 'C:/Users/385570/Desktop/data/WSINDy_PDE_zenodo/';
pde_names = {'burgers.mat',...
'KS.mat',...
'NLS.mat',...
Expand Down Expand Up @@ -199,7 +200,7 @@
figure(2);clf;
for j=1:size(loss_wsindy,1)-1
f = min(loss_wsindy(j,:));
g = min(loss_wsindy(end,loss_wsindy(1,:)==f));
g = min(loss_wsindy(end,loss_wsindy(j,:)==f));
loglog(loss_wsindy(end,:),loss_wsindy(j,:),'o-',g,f,'rx')
hold on
end
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