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libBlight #9

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adb35a3
remove lz4 sources, use library instead
EricDeveaud Jan 18, 2021
1f4f0f7
build static and dynamic Blight libraries
EricDeveaud Jan 18, 2021
9958bc6
remove extraneous file
EricDeveaud Jan 18, 2021
fc8ab6b
no inline
EricDeveaud Jan 18, 2021
3a6ea9b
add .gitignore
EricDeveaud Jan 18, 2021
8218702
fix build rules
EricDeveaud Jan 18, 2021
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4 changes: 4 additions & 0 deletions .gitignore
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Original file line number Diff line number Diff line change
@@ -0,0 +1,4 @@
*.o
libBlight*
bench_blight
snippet_*ic
8 changes: 4 additions & 4 deletions blight.cpp
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Original file line number Diff line number Diff line change
Expand Up @@ -634,7 +634,7 @@ void kmer_Set_Light::read_super_buckets(const string& input_file) {



inline kmer kmer_Set_Light::get_kmer(uint64_t mini, uint64_t pos) {
kmer kmer_Set_Light::get_kmer(uint64_t mini, uint64_t pos) {
kmer res(0);
uint64_t bit = (start_bucket[mini] + pos) * 2;
const uint64_t bitlast = bit + 2 * k;
Expand All @@ -647,7 +647,7 @@ inline kmer kmer_Set_Light::get_kmer(uint64_t mini, uint64_t pos) {



inline kmer kmer_Set_Light::get_kmer(uint64_t pos) {
kmer kmer_Set_Light::get_kmer(uint64_t pos) {
kmer res(0);
uint64_t bit = (pos)*2;
const uint64_t bitlast = bit + 2 * k;
Expand All @@ -660,13 +660,13 @@ inline kmer kmer_Set_Light::get_kmer(uint64_t pos) {



inline kmer kmer_Set_Light::update_kmer(uint64_t pos, kmer mini, kmer input) {
kmer kmer_Set_Light::update_kmer(uint64_t pos, kmer mini, kmer input) {
return update_kmer_local(start_bucket[mini] + pos, bucketSeq, input);
}



inline kmer kmer_Set_Light::update_kmer_local(uint64_t pos, const vector<bool>& V, kmer input) {
kmer kmer_Set_Light::update_kmer_local(uint64_t pos, const vector<bool>& V, kmer input) {
input <<= 2;
uint64_t bit0 = pos * 2;
input |= V[bit0] * 2 | V[bit0 + 1];
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334 changes: 0 additions & 334 deletions include/MurmurHash3.cpp
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