v3.0.0 #14
Workflow file for this run
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| name: Generate tables on BigQuery | |
| on: | |
| release: | |
| types: [released] | |
| env: | |
| MIMIC_IV_VERSION: 3_1 | |
| jobs: | |
| create-tables: | |
| runs-on: ubuntu-latest | |
| steps: | |
| - name: Check out repository code | |
| uses: actions/checkout@v3 | |
| - id: 'auth' | |
| uses: 'google-github-actions/auth@v0' | |
| with: | |
| project_id: ${{ secrets.GCP_PROJECT_ID }} | |
| credentials_json: ${{ secrets.GCP_SA_KEY }} | |
| - name: 'Set up Cloud SDK' | |
| uses: 'google-github-actions/setup-gcloud@v0' | |
| - name: Run make_concepts | |
| run: | | |
| echo "Generating tables on BigQuery" | |
| cd mimic-iv/concepts | |
| bash make_concepts.sh | |
| - name: Copy to release specific schema | |
| run: | | |
| echo "Copying tables to release specific schema: mimiciv_${MIMIC_IV_VERSION}_derived" | |
| bash mimic-iv/concepts/copy_concepts_to_versioned_schema.sh ${MIMIC_IV_VERSION} |