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Sub select WIP#14

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quentinblampey wants to merge 21 commits intomainMICS-Lab/novae:mainfrom sub_selectMICS-Lab/novae:sub_selectCopy head branch name to clipboard

Commits

Commits on Feb 9, 2025

• try subselect

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  8f6600e

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• plot proto

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  9ade370

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• print n_proto used temp

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• _sub_select1

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  f4f97bd

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Commits on Feb 10, 2025

• _sub_select2

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  9f5d4d7

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• try level lower

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  fae06ea

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• try more++ prototypes

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  304e8c2

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• do not update ilocs too early

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• _sub_select5

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Commits on Feb 11, 2025

• fix issue

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  8caf8d0

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• try no ilocs

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  f947759

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• try fine tune

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• try no kmeans for fine-tune

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• _sub_select8

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  0ab1b34

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• try training on intersection of genes

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  9b90a06

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• try with scgpt genes

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  30eac40

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• fix plot when prototypes_ilocs is None

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  d9b34ce

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• _sub_select11

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  727d81f

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• misc fix

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  73fef05

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• add leiden clustering

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  135a7f8

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• try lung with leiden

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  3c58850

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