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@MICA-MNI

MICA-MNI

Multimodal Imaging and Conenctome Analysis Lab at the Montreal Neurological Institute.

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  1. BrainSpace BrainSpace Public

    BrainSpace is an open-access toolbox that allows for the identification and analysis of gradients from neuroimaging and connectomics datasets | available in both Python and Matlab |

    Python 207 76

  2. BrainStat BrainStat Public

    A statistics and context decoding toolbox for neuroimaging.

    Jupyter Notebook 101 23

  3. ENIGMA ENIGMA Public

    The ENIGMA Toolbox is an open-source repository for accessing 100+ ENIGMA statistical maps, visualizing cortical and subcortical surface data, and relating neuroimaging findings to micro- and macro…

    Python 145 35

  4. micaopen micaopen Public

    Open Scripts and pipelines from the Multimodal Imaging and Connectome Analysis Lab at the Montreal Neurological Institute

    Jupyter Notebook 74 40

  5. micapipe micapipe Public

    micapipe from the Multimodal imaging and connectome analysis lab (http://mica-mni.github.io) at the Montreal Neurological Institute. Read The Docs documentation below

    Shell 97 34

  6. z-brains z-brains Public

    z-brains: open software for brain lesion lateralization and localization

    Python 10 5

Repositories

Showing 10 of 27 repositories
  • micaflow Public

    The easy way to process MRI data

    MICA-MNI/micaflow’s past year of commit activity
    Python 0 0 0 0 Updated Mar 22, 2025
  • LaMAR Public

    Label based Modality Agnostic Registration (LaMAR) is a MRI resgistration technique combines deep learning-based segmentation and numerical solutions to generate precise non linear warpfields

    MICA-MNI/LaMAR’s past year of commit activity
    1 0 0 0 Updated Mar 21, 2025
  • 2025_in-vivo_tauPET-mk6240_TLE Public

    This repository provides code for analyzing in-vivo tau aggregation in temporal lobe epilepsy (TLE) using 18F-MK6240 PET. It includes preprocessing, statistical analysis, and visualization scripts to assess tau deposition, connectivity patterns, and cognitive associations in TLE patients and controls.

    MICA-MNI/2025_in-vivo_tauPET-mk6240_TLE’s past year of commit activity
    Jupyter Notebook 2 MIT 0 0 0 Updated Mar 21, 2025
  • MRI-Histology_framework_for_SWM_architecture Public

    This repository contains analysis notebooks for studying SWM microstructure using post-mortem and in-vivo datasets. It includes preprocessing, statistical analysis, and visualization scripts to assess intensity profiles from all datasets, gradients from qMRI, and their correlations with cortical geometry, functional and structural connectivity.

    MICA-MNI/MRI-Histology_framework_for_SWM_architecture’s past year of commit activity
    1 MIT 0 0 0 Updated Mar 20, 2025
  • MICA-7t Public

    scripts for 7t sorting and organizing

    MICA-MNI/MICA-7t’s past year of commit activity
    Shell 8 GPL-3.0 0 0 0 Updated Mar 14, 2025
  • micapipe Public

    micapipe from the Multimodal imaging and connectome analysis lab (http://mica-mni.github.io) at the Montreal Neurological Institute. Read The Docs documentation below

    MICA-MNI/micapipe’s past year of commit activity
    Shell 97 GPL-3.0 34 29 (3 issues need help) 5 Updated Mar 12, 2025
  • MICA-MNI.github.io Public
    MICA-MNI/MICA-MNI.github.io’s past year of commit activity
    HTML 1 CC0-1.0 0 0 0 Updated Mar 4, 2025
  • z-brains Public

    z-brains: open software for brain lesion lateralization and localization

    MICA-MNI/z-brains’s past year of commit activity
    Python 10 BSD-3-Clause 5 5 0 Updated Feb 28, 2025
  • micaopen Public

    Open Scripts and pipelines from the Multimodal Imaging and Connectome Analysis Lab at the Montreal Neurological Institute

    MICA-MNI/micaopen’s past year of commit activity
    Jupyter Notebook 74 GPL-3.0 40 1 2 Updated Feb 8, 2025
  • GeneticRisk_TLE Public Forked from alexander-ngo/GeneticRisk_TLE

    Structural correlates of epilepsy genetic risk

    MICA-MNI/GeneticRisk_TLE’s past year of commit activity
    Python 0 1 0 0 Updated Feb 6, 2025
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