LSSTDESC · pgris · Oct 16, 2020 · Oct 23, 2020 · Nov 18, 2020 · Nov 19, 2020
diff --git a/__init__.py → __init__deprecated.py b/__init__.py → __init__deprecated.py
diff --git a/pyproject.toml b/pyproject.toml
@@ -0,0 +1,30 @@
+[build-system]
+requires = ["setuptools>=61.0.0"]
+build-backend = "setuptools.build_meta"
+
+[project]
+name = "sn_simulation"
+version = "1.1.0"
+requires-python = ">=3.5"
+dependencies = ["dustmaps",]
+authors = [
+  {name = "Philippe Gris", email = "[email protected]"}
+]
+maintainers = [
+  {name = "Philippe Gris", email = "[email protected]"}
+]
+description = "Simulations for SNe Ia"
+readme = "README.rst"
+license = {file = "LICENSE"}
+classifiers = ["Programming Language :: Python",]
+
+[tool.setuptools.packages.find]
+where = [".","sn_simu_input"]
+include = ['sn_simulator', 'sn_simu_wrapper', 'sn_simu_input']
+
+[tool.setuptools.package-data]
+"*" = ["*.txt"]
+
+[project.urls]
+Homepage = "http://github.com/lsstdesc/sn_simulation"
+Repository = "https://github.com/lsstdesc/sn_simulation"
diff --git a/requirements.txt b/requirements.txt
@@ -0,0 +1,2 @@
+###### Requirements without Version Specifiers ######
+#numpy
diff --git a/setup.py b/setup.py
diff --git a/setup_deprecated.py b/setup_deprecated.py
@@ -0,0 +1,34 @@
+from setuptools import setup
+
+# get the version here
+pkg_vars = {}
+
+with open("version.py") as fp:
+    exec(fp.read(), pkg_vars)
+
+setup(
+    name='sn_simulation',
+    version=pkg_vars['__version__'],
+    description='Simulations for supernovae',
+    url='http://github.com/lsstdesc/sn_simulation',
+    author='Philippe Gris',
+    author_email='[email protected]',
+    license='BSD',
+    packages=['sn_simulator', 'sn_simu_wrapper', 'sn_simu_input'],
+    # All files from folder sn_simu_input
+    package_data={'sn_simu_input': ['*.txt']},
+    python_requires='>=3.5',
+    zip_safe=False,
+    install_requires=[
+        'sn_tools>=0.1',
+        'dustmaps',
+        'sn_telmodel>=0.1'
+    ],
+)
+
+# pyproject.toml
+dependencies = [
+    "getObsAtmo@git+https://github.com/lsstdesc/getObsAtmo#egg=getObsAtmo",
+    "rubin_sim@git+https://github.com/lsst/rubin_sim.git#egg=rubin_sim",
+    "dustmaps",
+]
diff --git a/sn_simu_input/__init__.py b/sn_simu_input/__init__.py
@@ -0,0 +1 @@
+from .version import __version__
diff --git a/sn_simu_input/config_simulation.txt b/sn_simu_input/config_simulation.txt
@@ -0,0 +1,171 @@
+## production Id
+ProductionIDSimu prodid str #Production Id
+
+## SN parameters
+SN Id 100 int #SN Id
+SN type SN_Ia str #SN type
+# parameter dist
+SN modelPar nameFile x1_color_G10.csv str #SN dist filename
+SN modelPar dirFile reference_files str #SN dist model ref dir
+SN modelPar x1sigma 0 int #shift for x1 distrib parameter
+SN modelPar colorsigma 0 int #shift for color distrib parameter
+SN modelPar mbsigma 0 int #shift for mb SN parameter
+SN modelPar mbsigmafile sigma_mb_from_simu_Ny_40.hdf5 str #file for mbsigma application
+#x1
+SN x1 type unique str #SN x1 type
+SN x1 min -2.0 float #SN x1 min
+SN x1 max 0.2 float #SN x1 max
+SN x1 step 0.1 float #SN x1 step
+# color
+SN color type unique str #SN color type
+SN color min 0.2 float #SN color min
+SN color max 1.0 float #SN color max
+SN color step 0.1 float #SN color step
+# redshift
+SN z type unique str #SN z type
+SN z min 0.01 float #SN z min
+SN z max 1.0 float #SN z max
+SN z step 0.01 float #SN z step
+SN z rate combined str #SN z rate
+SN z weight sn_rate str #SN z weight(sn_rate/flat)
+SN z maxsimu 1.1 float # SN max z for rate
+SN z minsimu 0.01 float # SN max z for rate
+SN z sigmaz 1.e-5 float # redshift error to be propagated to zsim
+# daymax
+SN daymax type unique str #SN daymax type
+SN daymax step 1. float #SN daymax step
+SN daymax restricted 0 int #to restrict daymax values
+#rf cuts
+SN minRFphase -20. float #SN min rf phase
+SN maxRFphase 60. float #SN max rf phase
+SN minRFphaseQual -10. float #SN min rf phase qual
+SN maxRFphaseQual  35. float #SN max rf phase qual
+# other parameters
+SN absmag -19.0906 float #SN absmag
+SN band bessellB str #SN band
+SN magsys vega str #SN magsys
+SN differentialFlux 0 int #SN diff flux
+SN salt2Dir SALT2_Files str #SN SALT2 dir
+SN blueCutoffu 380. float #SN blue cutoff u-band
+SN redCutoffu 800. float #SN red cutoff u-band
+SN blueCutoffg 380. float #SN blue cutoff g-band
+SN redCutoffg 800. float #SN red cutoff g-band
+SN blueCutoffr 380. float #SN blue cutoff r-band
+SN redCutoffr 800. float #SN red cutoff	 r-band
+SN blueCutoffi 360. float #SN blue cutoff i-band
+SN redCutoffi 800. float #SN red cutoff	 i-band
+SN blueCutoffz 380. float #SN blue cutoff z-band
+SN redCutoffz 800. float #SN red cutoff z-band
+SN blueCutoffy 380. float #SN blue cutoff y-band
+SN redCutoffy 800. float #SN red cutoff y-band
+SN ebvofMW -1. float #SN E(B-V)
+SN NSNfactor 1 int #NSN*factor for simulation
+SN NSNabsolute -1 int #absolute number of SN to produce
+SN sigmaInt 0.0 float #SN intrinsic dispersion
+SN nspectra 0 int #Number of spectra to generate
+SN smearFlux 1 int #LC flux smearing
+SN alpha 0.13 float #nuisance parameter (alpha)
+SN beta 3.1 float #nuisance parameter (beta)
+SN x0 griddata 0 int #to extract x0 from griddata
+##Simulation parameters(from file)
+SN simuFile None str # simulation parameter file
+
+## Cosmology parameters
+Cosmology Model w0waCDM str #cosmology model
+Cosmology Om 0.30 float #cosmology Omegam
+Cosmology Ol 0.70 float #cosmology Omegall
+Cosmology H0 70.0 float #cosmology H0
+Cosmology w0 -1.0 float #cosmology w0
+Cosmology wa 0.0 float #cosmology wa
+
+#Light curve
+LC coadd 1 int #to coadd LC fluxes
+
+## Instrument
+InstrumentSimu name LSST str #instrument name
+InstrumentSimu telescope_dir throughputs str #main telescope dir
+InstrumentSimu telescope_tag 1.9 str #throughputs tag version
+InstrumentSimu throughputDir baseline str #instrument throughput dir
+InstrumentSimu atmosDir atmos str #instrument atmos dir
+InstrumentSimu atmosType const str #instrument atmos/const/dep
+#airmass
+InstrumentSimu airmass 1.2 float #instrument airmass
+InstrumentSimu sigma_airmass 0.0 float #instrument sigma_airmass
+InstrumentSimu round_airmass 1 int #instrument airmass rounding
+InstrumentSimu min_airmass 1.0 float #airmass min after smearing
+InstrumentSimu max_airmass 2.9 float #airmass max after smearing
+#aerosol
+InstrumentSimu aerosol 0.05 float #instrument aerosol
+InstrumentSimu sigma_aerosol 0.0 float #instrument sigma_aerosol
+InstrumentSimu round_aerosol 4 int #instrument aerosol rounding
+InstrumentSimu min_aerosol 0. float #aerosol min after smearing
+InstrumentSimu max_aerosol 0.5 float #aerosol max after smearing
+#pwv
+InstrumentSimu pwv 5.0 float #instrument precipit. water vapor
+InstrumentSimu sigma_pwv 0.0 float #instrument sigma precipit. water vapor
+InstrumentSimu round_pwv 3 int #instrument precipit. water vapor rounding
+InstrumentSimu min_pwv 0.0 float #pwv min after smearing
+InstrumentSimu max_pwv 25. float #pwv max after smearing
+#ozone
+InstrumentSimu ozone 300. float #ozone
+InstrumentSimu sigma_ozone 0. float #sigma_ozone
+InstrumentSimu round_ozone 3 int #ozone rounding
+InstrumentSimu min_ozone 0.0 float #ozone min after smearing
+InstrumentSimu max_ozone 600. float #ozone max after smearing
+#number of trial to estimate zp
+InstrumentSimu ntrial_zp 1 int #ntrial to estimate zp vs airmass
+
+
+
+
+
+##Observations
+Observations filename fullDbName str #observation file name
+Observations fieldtype WFD str #observations field type
+Observations fieldname all  str #observations field name (DD only)
+Observations coadd 0 int #observations coaddition per night
+Observations season -1 str #observations seasons 
+
+## Simulator
+Simulator name sn_simulator.sn_cosmo str #simulator name
+Simulator model salt3 str #simulator model
+Simulator version 2.0 float #simulator version
+Simulator errorModel 0 int #simulator error model
+
+## Reference_Files
+ReferenceFiles TemplateDir Template_LC str #dir for templates ref files 
+ReferenceFiles GammaDir reference_files str #dir for gamma ref files
+ReferenceFiles GammaFile gamma.hdf5 str #gamma ref file name
+ReferenceFiles DustCorrDir Template_Dust str #dir for template dust files
+ReferenceFiles fluxpixelDir reference_files str #dir for template dust files
+# ReferenceFiles zpDir reference_files str #dir for zp_airmass ref file
+# ReferenceFiles zpFile zp_airmass_v1.9.npy str #zp_airmass ref file
+
+## Host
+Host 0 int #Host
+
+# Display LC
+Display LC display 0 int #display LC
+Display LC time 5. float #display LC persistency time
+
+##Output:
+OutputSimu directory Output_Simu str #Output directory
+OutputSimu save 1 int #output save file in sn_simulator
+OutputSimu savefromwrapper 0 int #output save file in simuwrapper
+OutputSimu throwempty 1 int #do not save empty LC
+OutputSimu throwafterdump 1 int #remove LC after dumping on file
+OutputSimu clean 1 int #to clean output dir before processing
+
+#Multiprocessing
+MultiprocessingSimu nproc 1 int #multiprocessing number of procs
+
+# Pixelisation
+Pixelisation nside 64 int #pixelisation nside Healpix
+
+#Web path
+WebPathSimu https://me.lsst.eu/gris/DESC_SN_pipeline str #web path for reference files
+
+#include saturation effects
+saturation effect 0 int #to include saturation effects
+saturation psf single_gauss str #PSF for saturation effects
+saturation ccdfullwell 90.e3 float #ccd full well value 
diff --git a/sn_simu_input/sncosmo_builtins.txt b/sn_simu_input/sncosmo_builtins.txt
@@ -0,0 +1,121 @@
+name version type subtype subclass reference website notes
+nugent-sn1a 1.2 SN Ia TimeSeriesSource [N02] a
+nugent-sn91t 1.1 SN Ia TimeSeriesSource [S04] a
+nugent-sn91bg 1.1 SN Ia TimeSeriesSource [N02] a
+nugent-sn1bc 1.1 SN Ib/c TimeSeriesSource [L05] a
+nugent-hyper 1.2 SN Ib/c TimeSeriesSource [L05] a
+nugent-sn2p 1.2 SN IIP TimeSeriesSource [G99] a
+nugent-sn2l 1.2 SN IIL TimeSeriesSource [G99] a
+nugent-sn2n 2.1 SN IIn TimeSeriesSource [G99] a
+s11-2004hx 1.0 SN IIL/P TimeSeriesSource [S11] b [1]
+s11-2005lc 1.0 SN IIP TimeSeriesSource [S11] b [1]
+s11-2005hl 1.0 SN Ib TimeSeriesSource [S11] b [1]
+s11-2005hm 1.0 SN Ib TimeSeriesSource [S11] b [1]
+s11-2005gi 1.0 SN IIP TimeSeriesSource [S11] b [1]
+s11-2006fo 1.0 SN Ic TimeSeriesSource [S11] b [1]
+s11-2006jo 1.0 SN Ib TimeSeriesSource [S11] b [1]
+s11-2006jl 1.0 SN IIP TimeSeriesSource [S11] b [1]
+hsiao 1.0 SN Ia TimeSeriesSource [H07] c [2]
+hsiao 2.0 SN Ia TimeSeriesSource [H07] c [2]
+hsiao 3.0 SN Ia TimeSeriesSource [H07] c [2]
+hsiao-subsampled 3.0 SN Ia TimeSeriesSource [H07] c [2]
+salt2 2.0 SN Ia SALT2Source [G10] d
+salt2 2.4 SN Ia SALT2Source [B14b] d
+salt2-extended 1.0 SN Ia SALT2Source b [3]
+salt2-extended 2.0 SN Ia SALT2Source
+salt2-extended-h17 1.0 SN Ia SALT2Source [H17] e [4]
+snf-2011fe 1.0 SN Ia TimeSeriesSource [P13] f
+snana-2004fe 1.0 SN Ic TimeSeriesSource g [5]
+snana-2004gq 1.0 SN Ic TimeSeriesSource g [5]
+snana-sdss004012 1.0 SN Ic TimeSeriesSource g [5]
+snana-2006fo 1.0 SN Ic TimeSeriesSource g [5]
+snana-sdss014475 1.0 SN Ic TimeSeriesSource g [5]
+snana-2006lc 1.0 SN Ic TimeSeriesSource g [5]
+snana-2007ms 1.0 SN II-pec TimeSeriesSource g [5]
+snana-04d1la 1.0 SN Ic TimeSeriesSource g [5]
+snana-04d4jv 1.0 SN Ic TimeSeriesSource g [5]
+snana-2004gv 1.0 SN Ib TimeSeriesSource g [5]
+snana-2006ep 1.0 SN Ib TimeSeriesSource g [5]
+snana-2007y 1.0 SN Ib TimeSeriesSource g [5]
+snana-2004ib 1.0 SN Ib TimeSeriesSource g [5]
+snana-2005hm 1.0 SN Ib TimeSeriesSource g [5]
+snana-2006jo 1.0 SN Ib TimeSeriesSource g [5]
+snana-2007nc 1.0 SN Ib TimeSeriesSource g [5]
+snana-2004hx 1.0 SN IIP TimeSeriesSource g [5]
+snana-2005gi 1.0 SN IIP TimeSeriesSource g [5]
+snana-2006gq 1.0 SN IIP TimeSeriesSource g [5]
+snana-2006kn 1.0 SN IIP TimeSeriesSource g [5]
+snana-2006jl 1.0 SN IIP TimeSeriesSource g [5]
+snana-2006iw 1.0 SN IIP TimeSeriesSource g [5]
+snana-2006kv 1.0 SN IIP TimeSeriesSource g [5]
+snana-2006ns 1.0 SN IIP TimeSeriesSource g [5]
+snana-2007iz 1.0 SN IIP TimeSeriesSource g [5]
+snana-2007nr 1.0 SN IIP TimeSeriesSource g [5]
+snana-2007kw 1.0 SN IIP TimeSeriesSource g [5]
+snana-2007ky 1.0 SN IIP TimeSeriesSource g [5]
+snana-2007lj 1.0 SN IIP TimeSeriesSource g [5]
+snana-2007lb 1.0 SN IIP TimeSeriesSource g [5]
+snana-2007ll 1.0 SN IIP TimeSeriesSource g [5]
+snana-2007nw 1.0 SN IIP TimeSeriesSource g [5]
+snana-2007ld 1.0 SN IIP TimeSeriesSource g [5]
+snana-2007md 1.0 SN IIP TimeSeriesSource g [5]
+snana-2007lz 1.0 SN IIP TimeSeriesSource g [5]
+snana-2007lx 1.0 SN IIP TimeSeriesSource g [5]
+snana-2007og 1.0 SN IIP TimeSeriesSource g [5]
+snana-2007ny 1.0 SN IIP TimeSeriesSource g [5]
+snana-2007nv 1.0 SN IIP TimeSeriesSource g [5]
+snana-2007pg 1.0 SN IIP TimeSeriesSource g [5]
+snana-2006ez 1.0 SN IIn TimeSeriesSource g [5]
+snana-2006ix 1.0 SN IIn TimeSeriesSource g [5]
+snana-2004fe 2.0 SN Ic TimeSeriesSource
+snana-2004gq 2.0 SN Ic TimeSeriesSource
+snana-sdss004012 2.0 SN Ic TimeSeriesSource
+snana-2006fo 2.0 SN Ic TimeSeriesSource
+snana-sdss014475 2.0 SN Ic TimeSeriesSource
+snana-2006lc 2.0 SN Ic TimeSeriesSource
+snana-2007ms 2.0 SN II-pec TimeSeriesSource
+snana-04d1la 2.0 SN Ic TimeSeriesSource
+snana-04d4jv 2.0 SN Ic TimeSeriesSource
+snana-2004gv 2.0 SN Ib TimeSeriesSource
+snana-2006ep 2.0 SN Ib TimeSeriesSource
+snana-2007y 2.0 SN Ib TimeSeriesSource
+snana-2004ib 2.0 SN Ib TimeSeriesSource
+snana-2005hm 2.0 SN Ib TimeSeriesSource
+snana-2006jo 2.0 SN Ib TimeSeriesSource
+snana-2007nc 2.0 SN Ib TimeSeriesSource
+snana-2004hx 2.0 SN IIP TimeSeriesSource
+snana-2005gi 2.0 SN IIP TimeSeriesSource
+snana-2006gq 2.0 SN IIP TimeSeriesSource
+snana-2006kn 2.0 SN IIP TimeSeriesSource
+snana-2006jl 2.0 SN IIP TimeSeriesSource
+snana-2006iw 2.0 SN IIP TimeSeriesSource
+snana-2006kv 2.0 SN IIP TimeSeriesSource
+snana-2006ns 2.0 SN IIP TimeSeriesSource
+snana-2007iz 2.0 SN IIP TimeSeriesSource
+snana-2007nr 2.0 SN IIP TimeSeriesSource
+snana-2007kw 2.0 SN IIP TimeSeriesSource
+snana-2007ky 2.0 SN IIP TimeSeriesSource
+snana-2007lj 2.0 SN IIP TimeSeriesSource
+snana-2007lb 2.0 SN IIP TimeSeriesSource
+snana-2007ll 2.0 SN IIP TimeSeriesSource
+snana-2007nw 2.0 SN IIP TimeSeriesSource
+snana-2007ld 2.0 SN IIP TimeSeriesSource
+snana-2007md 2.0 SN IIP TimeSeriesSource
+snana-2007lz 2.0 SN IIP TimeSeriesSource
+snana-2007lx 2.0 SN IIP TimeSeriesSource
+snana-2007og 2.0 SN IIP TimeSeriesSource
+snana-2007ny 2.0 SN IIP TimeSeriesSource
+snana-2007nv 2.0 SN IIP TimeSeriesSource
+snana-2007pg 2.0 SN IIP TimeSeriesSource
+whalen-z15b 1.0 Pop III TimeSeriesSource [Whalen13] [6]
+whalen-z15d 1.0 Pop III TimeSeriesSource [Whalen13] [6]
+whalen-z15g 1.0 Pop III TimeSeriesSource [Whalen13] [6]
+whalen-z25b 1.0 Pop III TimeSeriesSource [Whalen13] [6]
+whalen-z25d 1.0 Pop III TimeSeriesSource [Whalen13] [6]
+whalen-z25g 1.0 Pop III TimeSeriesSource [Whalen13] [6]
+whalen-z40b 1.0 Pop III TimeSeriesSource [Whalen13] [6]
+whalen-z40g 1.0 Pop III TimeSeriesSource [Whalen13] [6]
+mlcs2k2 1.0 SN Ia MLCS2k2Source [Jha07] [7]
+snemo2 1.0 SN Ia SNEMOSource [Saunders18] h
+snemo7 1.0 SN Ia SNEMOSource [Saunders18] h
+snemo15 1.0 SN Ia SNEMOSource [Saunders18] h
diff --git a/sn_simu_input/version.py b/sn_simu_input/version.py
@@ -0,0 +1 @@
+__version__='v1.0.0'
Original file line number	Diff line number	Diff line change
		@@ -0,0 +1,2 @@
		###### Requirements without Version Specifiers ######
		#numpy