Issues

• Cached inputs are incongruent with what STRING transformer expects -> FileNotFoundError

  bug
  Knowledge-Graph-Hub/kg-covid-19#473 · Filter by author caufieldjh opened on Aug 3, 2023
  1

• Verify single SOT for NCBI Taxon class relationships

  bug
  Knowledge-Graph-Hub/kg-covid-19#464 · Filter by author caufieldjh opened on Nov 17, 2022

• Check on ingested CL terms and verify CP terms are not included

  bug
  Knowledge-Graph-Hub/kg-covid-19#463 · Filter by author caufieldjh opened on Nov 17, 2022

• Knowledge source on edges is unclear

  bug
  Knowledge-Graph-Hub/kg-covid-19#462 · Filter by author caufieldjh opened on Nov 17, 2022

• Update OntologyClass node categories

  bug
  Knowledge-Graph-Hub/kg-covid-19#461 · Filter by author caufieldjh opened on Nov 17, 2022

• Resolve duplicated edge categories

  bug
  Knowledge-Graph-Hub/kg-covid-19#460 · Filter by author caufieldjh opened on Nov 17, 2022

• Compressed graph incorrectly includes relative local path

  bug
  Knowledge-Graph-Hub/kg-covid-19#459 · Filter by author caufieldjh opened on Nov 4, 2022

• 404 error on chembl_28_molecule data

  bug
  Knowledge-Graph-Hub/kg-covid-19#458 · Filter by author caufieldjh opened on Jun 13, 2022

• Track memory usage during build

  enhancement
  Knowledge-Graph-Hub/kg-covid-19#454 · Filter by author caufieldjh opened on Apr 12, 2022

• in Sankey plot/dashboard transform node and edge category counts to log scale

  enhancement
  Knowledge-Graph-Hub/kg-covid-19#397 · Filter by author realmarcin opened on Feb 17, 2021

• Improve normalization of proteins

  bug
  Knowledge-Graph-Hub/kg-covid-19#386 · Filter by author justaddcoffee opened on Jan 5, 2021
  1

• ORF10 missing in GPI file source

  bug
  Knowledge-Graph-Hub/kg-covid-19#379 · Filter by author realmarcin opened on Dec 3, 2020
  

• interactions disappeared between 20201001 and 20201101 nt files

  bug
  Knowledge-Graph-Hub/kg-covid-19#376 · Filter by author realmarcin opened on Nov 21, 2020
  1

• malformed index.html in build base directories

  bug
  Knowledge-Graph-Hub/kg-covid-19#373 · Filter by author justaddcoffee opened on Nov 8, 2020

• Implement reaction ingests (Rhea, BioPAX, etc)

  new data source
  Knowledge-Graph-Hub/kg-covid-19#372 · Filter by author cmungall opened on Oct 9, 2020
  6

• Consider moving curated GPI file to our data repo

  enhancement
  Knowledge-Graph-Hub/kg-covid-19#371 · Filter by author justaddcoffee opened on Oct 8, 2020
  1

• how to incorporate/interface drug repurposing studies based on in silico screening?

  new data source
  Knowledge-Graph-Hub/kg-covid-19#366 · Filter by author realmarcin opened on Oct 5, 2020

• Ingest COVID antivirals from Czech Republic health ministry

  new data source
  Knowledge-Graph-Hub/kg-covid-19#365 · Filter by author realmarcin opened on Oct 5, 2020

• Add function in directory-indexer.py to add existing build

  enhancement
  Knowledge-Graph-Hub/kg-covid-19#359 · Filter by author justaddcoffee opened on Sep 28, 2020

• KG-COVID-19 prediction evaluation dashboard by method

  enhancement
  Knowledge-Graph-Hub/kg-covid-19#344 · Filter by author realmarcin opened on Sep 23, 2020

• downloadable files for KG-COVID-19 graph test/training sets

  enhancement
  Knowledge-Graph-Hub/kg-covid-19#343 · Filter by author realmarcin opened on Sep 23, 2020

• URLs from http://identifiers.org/mesh are missing label

  bug
  Knowledge-Graph-Hub/kg-covid-19#341 · Filter by author kliegr opened on Sep 18, 2020
  1

• Ingest clinical trials data from clinicaltrials.gov using yactp

  new data source
  Knowledge-Graph-Hub/kg-covid-19#330 · Filter by author justaddcoffee opened on Sep 3, 2020

• Ingest drug -> target information from SMS (small molecular suite)

  new data source
  Knowledge-Graph-Hub/kg-covid-19#329 · Filter by author justaddcoffee opened on Sep 3, 2020

• Ingests that use symmetric edge_labels (like interacts_with) should assert edge in both directions

  bugenhancement
  Knowledge-Graph-Hub/kg-covid-19#328 · Filter by author justaddcoffee opened on Sep 3, 2020
  1