Update changes to 1.6.0 for machines that switched to Rocky OS #1312
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| Original file line number | Diff line number | Diff line change |
|---|---|---|
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@@ -45,10 +45,6 @@ packages: | |
| externals: | ||
| - spec: [email protected] | ||
| prefix: /usr | ||
| cpio: | ||
| externals: | ||
| - spec: [email protected] | ||
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@@ -116,10 +112,6 @@ packages: | |
| externals: | ||
| - spec: [email protected]_312-b07 | ||
| prefix: /usr | ||
| libfuse: | ||
| externals: | ||
| - spec: [email protected] | ||
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@@ -183,11 +175,10 @@ packages: | |
| externals: | ||
| - spec: [email protected] | ||
| prefix: /usr | ||
| zip: | ||
| externals: | ||
| - spec: [email protected] | ||
| prefix: /usr | ||
|
|
||
| zlib: | ||
| require: ["~shared"] | ||
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| Original file line number | Diff line number | Diff line change |
|---|---|---|
|
|
@@ -46,10 +46,6 @@ packages: | |
| externals: | ||
| - spec: [email protected] | ||
| prefix: /usr | ||
| cpio: | ||
| externals: | ||
| - spec: [email protected] | ||
|
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@@ -121,10 +117,6 @@ packages: | |
| externals: | ||
| - spec: [email protected]_322-b06 | ||
| prefix: /usr | ||
| libfuse: | ||
| externals: | ||
| - spec: [email protected] | ||
|
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@@ -145,13 +137,11 @@ packages: | |
| buildable: False | ||
| externals: | ||
| - spec: [email protected] | ||
| prefix: /contrib/spack-stack/installs/mysql-8.0.31 | ||
| modules: | ||
| - mysql/8.0.31 | ||
| ncurses: | ||
| externals: | ||
| - spec: [email protected]+termlib abi=5 | ||
| prefix: /usr | ||
| perl: | ||
|
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@@ -186,11 +176,9 @@ packages: | |
| externals: | ||
| - spec: [email protected] | ||
| prefix: /usr | ||
| zip: | ||
| externals: | ||
| - spec: [email protected] | ||
| prefix: /usr | ||
| zlib: | ||
| require: ["~shared"] | ||
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| Original file line number | Diff line number | Diff line change |
|---|---|---|
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@@ -52,24 +52,14 @@ exit | |
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| # Build external packages for spack-stack | ||
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| mkdir -p /contrib/spack-stack-rocky8 | ||
| mkdir /contrib/spack-stack/modulefiles | ||
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| # Create the modulefile from the template in doc/modulefile_templates | ||
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||
| cd /contrib/spack-stack-rocky8 | ||
| mkdir -p mysql-8.0.31/src | ||
| cd mysql-8.0.31/src | ||
| wget https://dev.mysql.com/get/Downloads/MySQL-8.0/mysql-8.0.31-linux-glibc2.17-x86_64-minimal.tar.xz | ||
| tar -xvf mysql-8.0.31-linux-glibc2.17-x86_64-minimal.tar.xz | ||
| mv mysql-8.0.31-linux-glibc2.17-x86_64-minimal/* .. | ||
|
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@@ -78,37 +68,20 @@ cd /contrib/spack-stack/modulefiles | |
| mkdir mysql | ||
| # Create the modulefile from the template in doc/modulefile_templates | ||
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| # Set up basic modules for building the external ecflow package | ||
| mkdir -p /contrib/spack-stack-rocky8/ecflow-5.8.4/src | ||
| cd /contrib/spack-stack-rocky8/ecflow-5.8.4/src | ||
| wget https://confluence.ecmwf.int/download/attachments/8650755/ecFlow-5.8.4-Source.tar.gz?api=v2 | ||
| wget https://boostorg.jfrog.io/artifactory/main/release/1.78.0/source/boost_1_78_0.tar.gz | ||
| mv ecFlow-5.8.4-Source.tar.gz\?api\=v2 ecFlow-5.8.4-Source.tar.gz | ||
| tar -xvzf boost_1_78_0.tar.gz | ||
| tar -xvzf ecFlow-5.8.4-Source.tar.gz | ||
| export WK=/contrib/spack-stack-rocky8/ecflow-5.8.4/src/ecFlow-5.8.4-Source | ||
| export BOOST_ROOT=/contrib/spack-stack-rocky8/ecflow-5.8.4/src/boost_1_78_0 | ||
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| # Build static boost (to not interfere with spack-stack boost) | ||
| # Note that the default compiler supplied with the OS is used | ||
| cd $BOOST_ROOT | ||
| ./bootstrap.sh 2>&1 | tee bootstrap.log | ||
| $WK/build_scripts/boost_build.sh 2>&1 | tee boost_build.log | ||
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@@ -117,21 +90,51 @@ $WK/build_scripts/boost_build.sh 2>&1 | tee boost_build.log | |
| cd $WK | ||
| mkdir build | ||
| cd build | ||
| cmake .. -DPython3_EXECUTABLE=`which python3` -DCMAKE_INSTALL_PREFIX=/contrib/spack-stack-rocky8/ecflow-5.8.4 2>&1 | tee log.cmake | ||
| make -j4 2>&1 | tee log.make | ||
| make install 2>&1 | tee log.install | ||
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| cd /contrib/spack-stack-rocky8/ | ||
| mkdir -p ./modulefiles/ecflow | ||
| # Create the modulefile from the template in doc/modulefile_templates | ||
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| ############## Steps to perform when starting a new cluster ############## | ||
| source /contrib/admin/basic_setup.sh # sudo privileges requred to install packages | ||
| module purge | ||
| module unuse /opt/cray/craype/default/modulefiles | ||
| module unuse /opt/cray/modulefiles | ||
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| # For noaa-aws, run the line below as well: | ||
| module unuse /opt/intel/impi/2019.5.281/intel64/modulefiles | ||
| module use /contrib/spack-stack-rocky8/modulefiles | ||
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| # Loading modules | ||
| # | ||
| module load ecflow/5.8.4 | ||
| module load mysql/8.0.31 | ||
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| module load gnu | ||
| module load intel/2023.2.0 | ||
| module load impi/2023.2.0 | ||
| module unload gnu | ||
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| cd /contrib/spack-stack-rocky8/spack-stack-1.6.0 | ||
| source setup.sh | ||
| ## Create spack-stack environment, use the CSP name as needed: | ||
| ## set CLOUD variable to noaa-aws, noaa-gcloud, or noaa-azure | ||
| CLOUD=noaa-aws | ||
| spack stack create env --site $CLOUD --template unified-dev --name ue-intel | ||
| cd envs/ue-intel | ||
| spack env activate . | ||
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| ############## spack.yaml edits: | ||
| edit spack.yaml: | ||
| # 1) leave only "%intel" in "compilers" definitions | ||
| # 2) replace ^[email protected] by ^[email protected] under definitions, | ||
| # except for the Various esmf/mapl tags section | ||
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| spack concretize 2>&1 | tee log.concretize | ||
| spack install --verbose --fail-fast --show-log-on-error --no-check-signature 2>&1 | tee log.install | ||
| spack module lmod refresh | ||
| spack stack setup-meta-modules | ||
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| Original file line number | Diff line number | Diff line change |
|---|---|---|
| @@ -1,32 +1,17 @@ | ||
| compilers: | ||
| - compiler: | ||
| spec: intel@2021.10.0 | ||
| paths: | ||
| cc: /apps/oneapi/compiler/2023.2.0/linux/bin/intel64/icc | ||
| cxx: /apps/oneapi/compiler/2023.2.0/linux/bin/intel64/icpc | ||
| f77: /apps/oneapi/compiler/2023.2.0/linux/bin/intel64/ifort | ||
| fc: /apps/oneapi/compiler/2023.2.0/linux/bin/intel64/ifort | ||
| operating_system: rocky8 | ||
| target: x86_64 | ||
| modules: | ||
| - intel/2023.2.0 | ||
| environment: | ||
| prepend_path: | ||
| LD_LIBRARY_PATH: '/apps/oneapi/compiler/2023.2.0/linux/compiler/lib/intel64_lin:/apps/gnu/gcc-13.2.0/lib64' | ||
| flags: {} | ||
| extra_rpaths: [] |
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Can this be safely reverted?
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Yes, I copied today everything from current mirror to that one.