1.1.0

What's Changed

• Update Zenodo DOI in README.md by @robert-a-forsyth in #110
• ASCAT GC and RT correct by @AmberVerhasselt in #116
• ASCAT pdf plots, minor channel fix by @robert-a-forsyth in #117
• Template update to version 3.5.1 by @ljwharbers in #118
• Channel update by @robert-a-forsyth in #123
• ascat raw segments txt files added to output by @AmberVerhasselt in #126
• Fix path pattern for rephased VCF files by @Tim-Yu in #130
• initial syntax changes and bulk modules update by @ljwharbers in #137
• add skip_m6a param by @robert-a-forsyth in #135
• add replicates, perform QC on individual replicates before merge by @robert-a-forsyth in #138
• Output phased variants by @ljwharbers in #141
• Add compact inline channel structure comments to key workflow files by @ljwharbers in #140
• Multiqc nanoplot by @ljwharbers in #145
• Whatshap stats by @ljwharbers in #147
• Severus min support param and skip_fibernormal by @ljwharbers in #143
• Add Claude Code GitHub Workflow by @ljwharbers in #150
• Deepvariant by @robert-a-forsyth in #149
• Modkit by @robert-a-forsyth in #152
• Main merge by @robert-a-forsyth in #154
• Add pon citation by @ljwharbers in #157
• changelog by @ljwharbers in #158
• Deepvariant opt pon changes by @robert-a-forsyth in #160
• add long_phase supplementary alignment tag to extended args by @AmberVerhasselt in #163
• added changelog and docs by @ljwharbers in #162
• template update by @ljwharbers in #164
• Bug fix consensus by @robert-a-forsyth in #165
• updated wakhan by @ljwharbers in #166
• update default by @robert-a-forsyth in #168
• Dev by @robert-a-forsyth in #161

New Contributors

• @AmberVerhasselt made their first contribution in #116

Full Changelog: 1.0.0...1.1.0