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Update omic items
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@ylaizet
ylaizet committed Dec 18, 2018
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35 changes: 22 additions & 13 deletions data/ConceptualDomain.tsv
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Expand Up @@ -241,6 +241,7 @@ OSIRIS:O6-13 RPPA OSIRIS Enumerated String OSIRIS:TechnicalProtocol
OSIRIS:O6-14 Whole genome bisulfite sequencing OSIRIS Enumerated String OSIRIS:TechnicalProtocol
OSIRIS:O6-15 Whole genome sequencing OSIRIS Enumerated String OSIRIS:TechnicalProtocol
OSIRIS:O6-16 miRNA microarray OSIRIS Enumerated String OSIRIS:TechnicalProtocol
OSIRIS:O6-OTH Other OSIRIS Enumerated String OSIRIS:TechnicalProtocol
OSIRIS:O7-1 Affymetrix Cytoscan HD OSIRIS Enumerated String OSIRIS:PlatformName
OSIRIS:O7-2 Affymetrix EMET Plus Premier Pack OSIRIS Enumerated String OSIRIS:PlatformName
OSIRIS:O7-3 Affymetrix Genome-Wide Human SNP Array 5.0 OSIRIS Enumerated String OSIRIS:PlatformName
Expand Down Expand Up @@ -329,7 +330,9 @@ OSIRIS:O7-85 SOLiD sequencing OSIRIS Enumerated String OSIRIS:PlatformName
OSIRIS:O7-86 Digital PCR OSIRIS Enumerated String OSIRIS:PlatformName
OSIRIS:O7-87 NextSeq 500 OSIRIS Enumerated String OSIRIS:PlatformName
OSIRIS:O7-88 NovaSeq OSIRIS Enumerated String OSIRIS:PlatformName
OSIRIS:O10-0 Not applicable OSIRIS Enumerated String OSIRIS:PanelName
OSIRIS:O7-OTH Other OSIRIS Enumerated String OSIRIS:PlatformName
UMLS:C0439673 Unknown UMLS Enumerated String OSIRIS:PlatformName
UMLS:C1272460 Not applicable UMLS Enumerated String OSIRIS:PanelName
OSIRIS:O10-1 Ion AmpliSeq Cancer Hotspot Panel v2 OSIRIS Enumerated String OSIRIS:PanelName
OSIRIS:O10-2 Ion AmpliSeq Colon and Lung Cancer Research Panel v2 OSIRIS Enumerated String OSIRIS:PanelName
OSIRIS:O10-3 Ion AmpliSeq Comprehensive Cancer Panel OSIRIS Enumerated String OSIRIS:PanelName
Expand All @@ -340,11 +343,13 @@ OSIRIS:O10-7 Lyric: Ion AmpliSeq Profiler OSIRIS Enumerated String OSIRIS:Panel
OSIRIS:O10-8 QIAGEN GeneRead DNAseq Targeted Panels V2 OSIRIS Enumerated String OSIRIS:PanelName
OSIRIS:O10-9 SAFIR02 Panel OSIRIS Enumerated String OSIRIS:PanelName
OSIRIS:O10-10 Mosc3 OSIRIS Enumerated String OSIRIS:PanelName
OSIRIS:O13-1 Haploid OSIRIS Enumerated String OSIRIS:AlgorithmicPloidy
OSIRIS:O13-2 Diploid OSIRIS Enumerated String OSIRIS:AlgorithmicPloidy
OSIRIS:O13-3 Triploid OSIRIS Enumerated String OSIRIS:AlgorithmicPloidy
OSIRIS:O13-4 Tetraploid OSIRIS Enumerated String OSIRIS:AlgorithmicPloidy
OSIRIS:O13-0 Not available OSIRIS Enumerated String OSIRIS:AlgorithmicPloidy
OSIRIS:010-OTH Other OSIRIS Enumerated String OSIRIS:PanelName
UMLS:C0018590 Haploid OSIRIS Enumerated String OSIRIS:AlgorithmicPloidy
UMLS:C0012568 Diploid OSIRIS Enumerated String OSIRIS:AlgorithmicPloidy
UMLS:C3536727 Triploid OSIRIS Enumerated String OSIRIS:AlgorithmicPloidy
UMLS:C0333694 Tetraploid OSIRIS Enumerated String OSIRIS:AlgorithmicPloidy
OSIRIS:O13-OTH Other OSIRIS Enumerated String OSIRIS:AlgorithmicPloidy
UMLS:C0439673 Unknown UMLS Enumerated String OSIRIS:AlgorithmicPloidy
OSIRIS:O15-1 Gene expression OSIRIS Enumerated String OSIRIS:AlterationType
OSIRIS:O15-2 Protein expression OSIRIS Enumerated String OSIRIS:AlterationType
OSIRIS:O15-3 Fusion OSIRIS Enumerated String OSIRIS:AlterationType
Expand Down Expand Up @@ -387,14 +392,15 @@ LOINC:LA21277-1 chrY OSIRIS http://r.details.loinc.org/AnswerList/LL2938-0.html
OSIRIS:O19-1 MT OSIRIS Enumerated String OSIRIS:Chromosome
OSIRIS:O19-2 viral OSIRIS Enumerated String OSIRIS:Chromosome
OSIRIS:O19-3 bacterial OSIRIS Enumerated String OSIRIS:Chromosome
UMLS:C0439673 Unknown UMLS Enumerated String OSIRIS:Chromosome
OSIRIS:O22-1 GRCh37 FHIR (HL7) https://www.hl7.org/fhir/sequence-definitions.html#Sequence.referenceSeq.genomeBuild Enumerated String FHIR:Sequence
OSIRIS:O22-2 GRCh38 FHIR (HL7) https://www.hl7.org/fhir/sequence-definitions.html#Sequence.referenceSeq.genomeBuild Enumerated String FHIR:Sequence
OSIRIS:O24-1 gene OSIRIS Enumerated String OSIRIS:GenomeEntityType
OSIRIS:O24-2 miRNA OSIRIS Enumerated String OSIRIS:GenomeEntityType
OSIRIS:O24-3 piRNA OSIRIS Enumerated String OSIRIS:GenomeEntityType
OSIRIS:O24-4 mRNA OSIRIS Enumerated String OSIRIS:GenomeEntityType
OSIRIS:O24-5 ncRNA OSIRIS Enumerated String OSIRIS:GenomeEntityType
OSIRIS:O24-6 ORF OSIRIS Enumerated String OSIRIS:GenomeEntityType
UMLS:C0017337 Gene UMLS Enumerated String OSIRIS:GenomeEntityType
UMLS:C1101610 miRNA UMLS Enumerated String OSIRIS:GenomeEntityType
UMLS:C1956352 piRNA UMLS Enumerated String OSIRIS:GenomeEntityType
UMLS:C0035696 mRNA UMLS Enumerated String OSIRIS:GenomeEntityType
UMLS:C0887909 ncRNA UMLS Enumerated String OSIRIS:GenomeEntityType
UMLS:C0079941 ORF UMLS Enumerated String OSIRIS:GenomeEntityType
OSIRIS:O25-1 HGNC OSIRIS Enumerated String OSIRIS:GenomeEntityDatabase
OSIRIS:O25-2 miRDB OSIRIS Enumerated String OSIRIS:GenomeEntityDatabase
OSIRIS:O25-3 Entrez OSIRIS Enumerated String OSIRIS:GenomeEntityDatabase
Expand Down Expand Up @@ -8589,4 +8595,7 @@ MedDRA:10042554 Superficial thrombophlebitis MedDRA_CTCAE-v5.0 Enumerated Strin
MedDRA:10042569 Superior vena cava syndrome MedDRA_CTCAE-v5.0 Enumerated String MedDRA_CTCAE-v5.0
MedDRA:10043565 Thromboembolic event MedDRA_CTCAE-v5.0 Enumerated String MedDRA_CTCAE-v5.0
MedDRA:10047065 Vascular disorders - Other, specify MedDRA_CTCAE-v5.0 Enumerated String MedDRA_CTCAE-v5.0
MedDRA:10047115 Vasculitis MedDRA_CTCAE-v5.0 Enumerated String MedDRA_CTCAE-v5.0
MedDRA:10047115 Vasculitis MedDRA_CTCAE-v5.0 Enumerated String MedDRA_CTCAE-v5.0
UMLS:C1298908 No UMLS Enumerated String OSIRIS:Boolean
UMLS:C1298907 Yes UMLS Enumerated String OSIRIS:Boolean
UMLS:C0439673 Unknown UMLS Enumerated String OSIRIS:Boolean
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