PTMint

A website (PTMint) for Post Translational Modification (PTM) associated with Protein-Protein Interactions created by Xiaokun Hong, Ningshan Li, Jiyang Lv

Citation

Hong X, Li N, Lv J, Zhang Y, Li J*, Zhang J*, Chen HF*. PTMint database of experimentally verified PTM regulation on protein-protein interaction. Bioinformatics. 2023 Jan 1;39(1):btac823. doi: 10.1093/bioinformatics/btac823. PMID: 36548389; PMCID: PMC9848059.

Contact

<1>haifengchen@sjtu.edu.cn <2>hongxk@fzu.edu.cn

Set up environment

1. Install Anaconda, and create a environment based on Python 3.9.7
2. Install Python packages (latest version up to 2022-02-16)
   • Flask: 2.0.3 (latest version in conda is 2.0.2)
   • Flask-WTF: 1.0.0
   • WTForms: 3.0.1
   • Flask-Bootstrap: 3.3.7.1
   • Jinja2: 3.0.3
   • pandas: 1.4.1
   • gunicorn: 20.1.0plotnine
   • plotnine: 0.8.0

conda install -c conda-forge -c anaconda Flask=2.0.2 Flask-WTF=1.0.0 WTForms=3.0.1 Flask-Bootstrap=3.3.7.1 Jinja2=3.0.3 pandas=1.4.1 gunicorn=20.1.0 plotnine=0.8.0

3. Other packages no need to install (latest version up to 2022-02-16; best to install them as network connection from China may fail)
   • Bootstrap: v5.1.3
   • jQuery: v3.6.0
   • jQuery UI: v1.13.1