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1ef39eb
Added atol every allclose
frheault Aug 3, 2020
25c000d
sync gdrive md5sum
frheault Aug 3, 2020
68928d8
Update for suffix and more robust visualisation
frheault Aug 3, 2020
383e87a
Update gdrive link
frheault Aug 3, 2020
9192b26
Merge branch 'master' of https://github.com/scilus/scilpy into comput…
frheault Aug 3, 2020
4939f8b
Merge branch 'master' of https://github.com/scilus/scilpy into typo_r…
frheault Aug 3, 2020
10bc356
Fix threshold usage for commit and h5
frheault Aug 5, 2020
2eee892
More robust for thresholding input
frheault Aug 5, 2020
d4f1bf7
Fix float
frheault Aug 5, 2020
2410a1e
Support lowercase
frheault Aug 5, 2020
10bba2c
Robust for empty connection
frheault Aug 12, 2020
7df9e09
Revert to reconstruct
frheault Aug 12, 2020
1983b47
Using arraySequence
frheault Aug 12, 2020
06c8ee2
Merge branch 'master' of https://github.com/scilus/scilpy into commit…
frheault Aug 12, 2020
d29da9b
Cleaning
frheault Aug 12, 2020
da39b8d
Manage filesize after commit filtering
frheault Aug 15, 2020
9d853ed
Empty in transfo
frheault Aug 15, 2020
1af6f1e
close commit
frheault Aug 18, 2020
0a3ef5d
Merge branch 'master' of https://github.com/scilus/scilpy into commit…
frheault Aug 19, 2020
af75271
Switch to using with statement for safety
frheault Aug 19, 2020
d100260
Check for mean_fixel
frheault Aug 19, 2020
a1eecdc
Merge branch 'master' of https://github.com/scilus/scilpy into comput…
frheault Aug 19, 2020
3a1af13
add the possibility to add options to eddy or topup
arnaudbore Aug 19, 2020
38f4b74
remove default value command
arnaudbore Aug 19, 2020
b48899a
Memory safe operation
frheault Aug 19, 2020
04b63c4
Fix std/mean
frheault Aug 19, 2020
058e2c7
Fix std so its equal to numpy
frheault Aug 19, 2020
48ade05
Adapt connectivity math with nibabel
frheault Aug 19, 2020
75803d1
Remove copy
frheault Aug 20, 2020
3a3cac1
add a helper help
arnaudbore Aug 20, 2020
95e979e
answer francois comments
arnaudbore Aug 20, 2020
75e2c70
Remove ref
frheault Aug 21, 2020
cea0531
Replace json by txt in doc
frheault Sep 1, 2020
a29fe17
Merge pull request #292 from frheault/compute_connectivity_header
arnaudbore Sep 1, 2020
216224e
Merge pull request #294 from frheault/typo_reoder_connectivity
arnaudbore Sep 1, 2020
5a69309
Fix conflict
frheault Sep 1, 2020
546d423
Merge pull request #296 from frheault/commit_threshold_h5
arnaudbore Sep 2, 2020
50d171a
Crash of more than one 4D
frheault Sep 3, 2020
ac950d8
Pep8 fix
frheault Sep 10, 2020
169ffa8
Fix dipy version
frheault Sep 10, 2020
d36ff36
Merge pull request #307 from frheault/robustify_split_image_math
arnaudbore Sep 11, 2020
458a87e
Merge pull request #306 from arnaudbore/add_options_to_fsl_eddy
GuillaumeTh Sep 15, 2020
ec03fe0
ENH: Update dipy,vtk,ubuntu version
AntoineTheb Sep 18, 2020
8939ff4
ENH: Add multi-shell multi-tissue scripts for computing frfs and fodfs
AntoineTheb Sep 19, 2020
96c9fab
FIX: Pep8
AntoineTheb Sep 19, 2020
cfa0523
ENH: Add proper files and revert wrong files
AntoineTheb Sep 19, 2020
23c82cd
FIX: Update dipy version
AntoineTheb Sep 22, 2020
f5c6730
FIX: Fix Python3.8 yield-in-generator deprecation and move test
AntoineTheb Sep 22, 2020
9119ce4
Reduce tests
GuillaumeTh Sep 22, 2020
faa5e7e
Change encoding
GuillaumeTh Sep 22, 2020
d4c809b
Fix
GuillaumeTh Sep 22, 2020
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2 changes: 2 additions & 0 deletions .gitignore
Original file line number Diff line number Diff line change
Expand Up @@ -2,6 +2,8 @@
*.pyo
*.sublime*
*.idea*
*.swp
*.swo

# Byte-compiled / optimized / DLL files
__pycache__/
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6 changes: 3 additions & 3 deletions .travis.yml
Original file line number Diff line number Diff line change
@@ -1,12 +1,12 @@
dist: xenial
dist: bionic
language: python
python:
- "3.5"
- "3.6"
- "3.7"
- "3.8"

before_install:
- sudo wget -O- http://neuro.debian.net/lists/xenial.us-ca.full | sudo tee /etc/apt/sources.list.d/neurodebian.sources.list
- sudo wget -O- http://neuro.debian.net/lists/bionic.us-ca.full | sudo tee /etc/apt/sources.list.d/neurodebian.sources.list
- sudo apt-key adv --recv-keys --keyserver pool.sks-keyservers.net 2649A5A9 || { sudo wget -q -O- http://neuro.debian.net/_static/neuro.debian.net.asc | sudo apt-key add -; }
- sudo apt-get update
- sudo apt-get update
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6 changes: 3 additions & 3 deletions requirements.txt
Original file line number Diff line number Diff line change
Expand Up @@ -2,7 +2,7 @@ bz2file==0.98.*
coloredlogs==10.0.*
cycler==0.10.*
Cython==0.29.*
dipy>=1.1.0
dipy==1.2.*
fury==0.2.*
future==0.17.*
h5py==2.9.*
Expand All @@ -20,11 +20,11 @@ scikit-learn==0.22.*
scipy==1.4.*
setuptools==46.1.*
six==1.15.*
vtk==8.1.*
vtk==9.0.1
trimeshpy==0.0.*
coloredlogs==10.0.*
nilearn==0.6.*
pytest==5.3.*
pytest==6.0.*
pytest_console_scripts==0.2.*
googledrivedownloader==0.*
requests==2.23.*
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