Update fastq and bam files

Replacement of fastq and bam files

• fastq files basecalled from fast5 converted blow5 files using Guppy 6.4.2
• bam files using updated fastq files with Minimap2-2.22

Added in code for SG-NEx manuscript

Inclusion of new cell lines in the core dataset

• Included long and short read RNA-seq data for H9 and HEYA8 samples in the core dataset
• Included two large cDNA samples for Hct116 (>100 mil)
• Updated some problematic fastq files on ENA and AWS

Update release of SG-NEx dataset

We are happy to announce the update release (v0.4.0) of the SG-NEx data!

We have added

• raw signal data in BLOW5 format,
• with a tutorial on usage here.

For how to access the data on AWS, you can refer to the data access tutorial here or you can directly browse the S3 bucket with the BLOW5 files here

SG-NEx data release v0.2-pre-release

New release of SG-NEx datasets

Full Changelog:

• added short read samples that are matched to long read samples for the 5 human cancer cell lines
• updated data access links
• added the SG-NEx preprint reference citation
• added use cases and applications
• update on the data usage note

SG-NEx data release v0.1-pre-release

Please refer to https://github.com/GoekeLab/sg-nex-data for detailed description of the SG-NEx project