Issues

• SEACR norm option on normalized bed files

  FredHutch/SEACR#105 · Filter by author ankita86 opened on Jul 24, 2026

• Plans of releasing v1.4?

  FredHutch/SEACR#103 · Filter by author mirpedrol opened on May 14, 2025

• Unable to access to web server

  FredHutch/SEACR#102 · Filter by author daisyko opened on Oct 23, 2024

• SEACR_showing Error

  FredHutch/SEACR#100 · Filter by author dhurjhotisaha opened on Jun 18, 2024

• Error in SEACR_1.3.sh running

  FredHutch/SEACR#98 · Filter by author dhurjhotisaha opened on Jan 24, 2024
  1

• inconsistent results with SEACR server

  FredHutch/SEACR#97 · Filter by author Rfriedmancolumbia opened on Sep 5, 2023

• Failed to run with control IgG

  FredHutch/SEACR#95 · Filter by author SergioRodLla opened on May 31, 2023
  1

• signal to noise ratio

  FredHutch/SEACR#94 · Filter by author min0609 opened on May 16, 2023

• SEACR without control – what is the difference between relaxed and stringent mode?

  FredHutch/SEACR#93 · Filter by author teemuronkko opened on Jan 19, 2023

• Improbably high peak call counts with low IgG read counts -- any way around this?

  FredHutch/SEACR#92 · Filter by author SolKatzman opened on Jan 11, 2023

• Request: more information in SEACR log output

  FredHutch/SEACR#91 · Filter by author SolKatzman opened on Jan 11, 2023
  1

• big replicates discrepancy for peaking calling when using negative control

  FredHutch/SEACR#89 · Filter by author icanwinwyz opened on Aug 8, 2022
  2

• Different SEACR peak calling results between IgG and 2ndAbOnly (negative controls)

  FredHutch/SEACR#88 · Filter by author jqiu1 opened on Jul 29, 2022
  1

• SEACR missing lots of obvious peaks

  FredHutch/SEACR#87 · Filter by author Lillianwu0314 opened on Jun 27, 2022
  5

• SEACR run failed for control mode

  FredHutch/SEACR#86 · Filter by author sfpacman opened on Jun 3, 2022
  1

• Issue Visualizing Control Data

  FredHutch/SEACR#83 · Filter by author RomeroMatt opened on Apr 13, 2022

• If you call the script from outside the script's directory, the Rscript cannot find the temporary files created by the shell script

  FredHutch/SEACR#82 · Filter by author somethingp opened on Mar 24, 2022
  1

• error on mac os X 12.2.1

  FredHutch/SEACR#79 · Filter by author njmuwangxin opened on Mar 6, 2022
  4

• Possible bug in peak calling_influenced by sequencing depth

  FredHutch/SEACR#76 · Filter by author zuzerdhoondia opened on Jan 6, 2022
  2

• Zero bytes output bed file

  FredHutch/SEACR#75 · Filter by author mkim0327 opened on Dec 6, 2021
  1

• Running a range of thresholds vs finding quantiles of all peaks

  FredHutch/SEACR#74 · Filter by author benayang opened on Nov 25, 2021
  1

• *.auc.threshold.merge.bed not created

  FredHutch/SEACR#72 · Filter by author MariaRig opened on Nov 19, 2021
  3

• Unsure of numerical threshold

  FredHutch/SEACR#70 · Filter by author hsriniva11 opened on Oct 5, 2021
  2

• line 102: s?9d?o???d??1.auc.bed: Invalid argument

  FredHutch/SEACR#69 · Filter by author madurham opened on Aug 25, 2021
  1

• boardpeaks calling

  FredHutch/SEACR#67 · Filter by author 809825706 opened on Aug 10, 2021
  1