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@JanVogelsang
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Currently, JUBE only allows parameters with the mode set to python to be simple expressions, which is quite restrictive.
This PR adds the possibility for any arbitrary python code to be passed as a parameter value, which will then use the code's return value as parameter value.

@thobreuer
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Can you share a few parameter examples that use this extension?

@JanVogelsang
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JanVogelsang commented Feb 15, 2024

I just have a single concrete example where I use this functionality in my benchmarks (manually generating a cpu-bind-mask to prevent the cpu pinning bug on the JSC systems to affect our results):

- name: cpu_bind_mask
        type: string
        separator: ;
        mode: python
        "_": |
           exec("cpu_bind_masks = list()\nbits_per_task = $threads_per_task\ncurrent_block = 0\nnum_blocks = 0\ncurrent_block_free = 4\nfor _ in range($tasks_per_node):\n    bits_left = bits_per_task\n    cpu_bind_masks.append('0x')\n    while bits_left >= current_block_free:\n        mask = '1'*current_block_free\n        cpu_bind_masks[-1] += hex(int(mask, 2))[2:].upper()\n        bits_left -= current_block_free\n        current_block_free = 4\n        num_blocks += 1\n    if bits_left > 0:\n        mask = '1'*bits_left + '0'*(4-bits_left)\n        cpu_bind_masks[-1] += hex(int(mask, 2))[2:].upper()\n        current_block_free -= bits_left\n    cpu_bind_masks[-1] += '0'*current_block\n    current_block += num_blocks");return ",".join(cpu_bind_masks)

However, this is equivalent to any parameter that can't be written in a single line, e.g.:

- {name: scale, type: int, mode: python, "_": "import math; math.sqrt($num_nodes)"

Ideally, if one could just define custom functions that one could then call inside parameter value definitions (i.e., eval calls), there would be no need for exec anymore. Using exec is just a simple workaround that I could implement myself without digging too deep into the Jube code.

@JanVogelsang
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Ping!

@thobreuer
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I have been informed that you are aware that we have made major internal changes as part of a master's thesis that we are currently working on. I have also been told that you have already been provided with the code produced as part of that thesis for testing, and that the changes proposed here are not compatible with it without further modification. Unfortunately, I don't know the details of these tests and what caused the problems. If you have any further information on this, it would be helpful if you could share it with us. One of our next steps will be to release the master's thesis code and further code extension. I cannot give an exact timetable at this stage as this will depend on other factors.

@JanVogelsang
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@thobreuer As far as I am concerned, the thesis is entirely independent of the changes in this PR. Is there any update on that?

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2 participants