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@ErasmusMC-Bioinformatics

Erasmus Medical Center

Bioinformatics Department

Popular repositories Loading

  1. WeFaceNano WeFaceNano Public

    Nanopore plasmid pipeline (FAST5 basecalling, assembly, plasmid identification and antimicrobial resistance genes identification).

    Python 12 1

  2. galaxytools-emc galaxytools-emc Public

    Tool Shed repositories maintained and developed by the Erasmus University Medical Center, following best practices guidelines set out by the Intergalactic Utilities Commission https://wiki.galaxypr…

    Python 3 1

  3. benchAMRking benchAMRking Public

    SCSS 3 1

  4. EMC-MetaMicrobes EMC-MetaMicrobes Public

    Nextflow pipeline to detect and classify microbial reads in sequencing data from human samples.

    Nextflow 3 2

  5. fuma fuma Public

    Forked from yhoogstrate/fuma

    💨🐆 Fusion Matcher: Match predicted fusions according to chromosomal location or gene annotation(s)

    Python 2 3

  6. galaxy-mothur-toolset galaxy-mothur-toolset Public

    All information pertaining to the Galaxy Mothur Toolkit (GMT) project

    Python 2 2

Repositories

Showing 10 of 72 repositories
  • src-component-pulsar Public

    SRC Pulsar Component

    ErasmusMC-Bioinformatics/src-component-pulsar’s past year of commit activity
    HTML 1 LGPL-2.1 1 0 1 Updated May 13, 2025
  • nextNEOpi Public Forked from icbi-lab/nextNEOpi

    nextNEOpi: a comprehensive pipeline for computational neoantigen prediction

    ErasmusMC-Bioinformatics/nextNEOpi’s past year of commit activity
    Nextflow 0 26 0 0 Updated Apr 14, 2025
  • molclass Public

    Moleculair classification tool, search for a variant and get results from many sources

    ErasmusMC-Bioinformatics/molclass’s past year of commit activity
    Python 1 0 0 0 Updated Apr 2, 2025
  • geneyx.analysis.api Public Forked from geneyx/geneyx.analysis.api

    Geneyx Analysis API

    ErasmusMC-Bioinformatics/geneyx.analysis.api’s past year of commit activity
    Python 0 7 0 0 Updated Mar 26, 2025
  • AMR-Pathfinder Public Forked from ErasmusMC-Bioinformatics/benchAMRking
    ErasmusMC-Bioinformatics/AMR-Pathfinder’s past year of commit activity
    SCSS 0 CC0-1.0 1 0 0 Updated Feb 18, 2025
  • EMC-MetaMicrobes Public

    Nextflow pipeline to detect and classify microbial reads in sequencing data from human samples.

    ErasmusMC-Bioinformatics/EMC-MetaMicrobes’s past year of commit activity
    Nextflow 3 MIT 2 1 0 Updated Dec 12, 2024
  • SuReCAN Public Forked from ErasmusMC-Bioinformatics/MasterProjectAI_Daria-
    ErasmusMC-Bioinformatics/SuReCAN’s past year of commit activity
    Jupyter Notebook 0 1 0 0 Updated Dec 1, 2024
  • infrastructure Public
    ErasmusMC-Bioinformatics/infrastructure’s past year of commit activity
    Jinja 0 1 1 0 Updated Oct 22, 2024
  • musica Public Forked from marcos-diazg/musica

    MuSiCa - Mutational Signatures in Cancer

    ErasmusMC-Bioinformatics/musica’s past year of commit activity
    R 0 MIT 14 0 0 Updated Sep 26, 2024
  • DL_LCNEC_pRBsubtyping_HE Public
    ErasmusMC-Bioinformatics/DL_LCNEC_pRBsubtyping_HE’s past year of commit activity
    Jupyter Notebook 0 0 0 0 Updated Sep 26, 2024
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