deps: upgrade packages for python 3.13.x

[a-mpch]

While building from source on MacOS ARM from scratch using python 3.13.0 poetry install didn't work with the following error 👇🏼

the configured Python interpreter version (3.13) is newer than PyO3's maximum supported version (3.12)

❯ poetry install
Installing dependencies from lock file

Package operations: 84 installs, 0 updates, 0 removals

  - Installing rpds-py (0.18.1): Failed

  ChefBuildError

  Backend subprocess exited when trying to invoke build_wheel

  Running `maturin pep517 build-wheel -i /private/var/folders/8z/c_zq_pmj1ls25zbpntx90p580000gn/T/tmprvpz3jzd/.venv/bin/python --compatibility off`
  📦 Including license file "/private/var/folders/8z/c_zq_pmj1ls25zbpntx90p580000gn/T/tmpnfbbqnjs/rpds_py-0.18.1/LICENSE"
  🔗 Found pyo3 bindings
  🐍 Found CPython 3.13 at /private/var/folders/8z/c_zq_pmj1ls25zbpntx90p580000gn/T/tmprvpz3jzd/.venv/bin/python
  📡 Using build options features from pyproject.toml
  💻 Using `MACOSX_DEPLOYMENT_TARGET=11.0` for aarch64-apple-darwin by default
     Compiling target-lexicon v0.12.9
     Compiling once_cell v1.18.0
     Compiling autocfg v1.1.0
     Compiling proc-macro2 v1.0.66
     Compiling libc v0.2.147
     Compiling unicode-ident v1.0.11
     Compiling parking_lot_core v0.9.8
     Compiling cfg-if v1.0.0
     Compiling portable-atomic v1.6.0
     Compiling scopeguard v1.1.0
     Compiling smallvec v1.11.0
     Compiling heck v0.4.1
     Compiling static_assertions v1.1.0
     Compiling triomphe v0.1.9
     Compiling unindent v0.2.3
     Compiling indoc v2.0.4
     Compiling archery v1.2.0
     Compiling lock_api v0.4.10
     Compiling memoffset v0.9.0
     Compiling rpds v1.1.0
     Compiling pyo3-build-config v0.20.3
     Compiling quote v1.0.31
     Compiling parking_lot v0.12.1
     Compiling syn v2.0.32
     Compiling pyo3-ffi v0.20.3
     Compiling pyo3 v0.20.3
  error: failed to run custom build command for `pyo3-ffi v0.20.3`

  Caused by:
    process didn't exit successfully: `/private/var/folders/8z/c_zq_pmj1ls25zbpntx90p580000gn/T/tmpnfbbqnjs/rpds_py-0.18.1/target/release/build/pyo3-ffi-224612b39250549c/build-script-build` (exit status: 1)
    --- stdout
    cargo:rerun-if-env-changed=PYO3_CROSS
    cargo:rerun-if-env-changed=PYO3_CROSS_LIB_DIR
    cargo:rerun-if-env-changed=PYO3_CROSS_PYTHON_VERSION
    cargo:rerun-if-env-changed=PYO3_CROSS_PYTHON_IMPLEMENTATION
    cargo:rerun-if-env-changed=PYO3_PRINT_CONFIG
    cargo:rerun-if-env-changed=PYO3_USE_ABI3_FORWARD_COMPATIBILITY

    --- stderr
    error: the configured Python interpreter version (3.13) is newer than PyO3's maximum supported version (3.12)
    = help: please check if an updated version of PyO3 is available. Current version: 0.20.3
    = help: set PYO3_USE_ABI3_FORWARD_COMPATIBILITY=1 to suppress this check and build anyway using the stable ABI
  warning: build failed, waiting for other jobs to finish...
  💥 maturin failed
    Caused by: Failed to build a native library through cargo
    Caused by: Cargo build finished with "exit status: 101": `env -u CARGO MACOSX_DEPLOYMENT_TARGET="11.0" PYO3_ENVIRONMENT_SIGNATURE="cpython-3.13-64bit" PYO3_PYTHON="/private/var/folders/8z/c_zq_pmj1ls25zbpntx90p580000gn/T/tmprvpz3jzd/.venv/bin/python" PYTHON_SYS_EXECUTABLE="/private/var/folders/8z/c_zq_pmj1ls25zbpntx90p580000gn/T/tmprvpz3jzd/.venv/bin/python" "cargo" "rustc" "--features" "pyo3/extension-module" "--message-format" "json-render-diagnostics" "--manifest-path" "/private/var/folders/8z/c_zq_pmj1ls25zbpntx90p580000gn/T/tmpnfbbqnjs/rpds_py-0.18.1/Cargo.toml" "--release" "--lib" "--" "-C" "link-arg=-undefined" "-C" "link-arg=dynamic_lookup" "-C" "link-args=-Wl,-install_name,@rpath/rpds.cpython-313-darwin.so"`
  Error: command ['maturin', 'pep517', 'build-wheel', '-i', '/private/var/folders/8z/c_zq_pmj1ls25zbpntx90p580000gn/T/tmprvpz3jzd/.venv/bin/python', '--compatibility', 'off'] returned non-zero exit status 1


  at ~/.local/pipx/venvs/poetry/lib/python3.13/site-packages/poetry/installation/chef.py:164 in _prepare
      160│
      161│                 error = ChefBuildError("\n\n".join(message_parts))
      162│
      163│             if error is not None:
    → 164│                 raise error from None
      165│
      166│             return path
      167│
      168│     def _prepare_sdist(self, archive: Path, destination: Path | None = None) -> Path:

Note: This error originates from the build backend, and is likely not a problem with poetry but with rpds-py (0.18.1) not supporting PEP 517 builds. You can verify this by running 'pip wheel --no-cache-dir --use-pep517 "rpds-py (==0.18.1)"'.

As expected, versions 3.10.9 and 3.8.10 works well without the updated rpds-py
Tried to upgrade packages without breaking changes but wasn't possible because of grcpio-tools next versions required protobuf >5, changing how code is generated.

Did all package upgrades that poetry required me to build it.
Still needs some double checking and tests

Changelog-None