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… holographic seed
- scripts/setup_uv_envs.sh + scripts/requirements/: uv-based env setup for
fe-base, fe-jobshop, fe-pyportfolioopt, fe-optics replacing per-task conda deps
- scripts/run_full_baseline_validation.py: switch JobShop/Optics/PyPortfolioOpt/
CoFlyers/Dawn/DuckDB/EV2Gym/PyMOTO tasks to uv venvs via task.runtime.python_path;
add ProtonTherapyPlanning and perturbation_prediction (76 tasks total, was 74);
inject HOLO_EVAL_SEED=3 for holographic_multispectral_focusing
- benchmarks/ParticlePhysics/ProtonTherapyPlanning/frontier_eval/: unified metadata
+ verification/evaluate_unified.py wrapper (run candidate → plan.json → score)
- benchmarks/SingleCellAnalysis/perturbation_prediction/frontier_eval/: unified
metadata + verification/evaluate_unified.py wrapper (candidate → prediction.h5ad
→ Pearson/Spearman/cosine; dataset auto-downloaded from OpenProblems S3)
- benchmarks/Optics/frontier_eval/run_eval.sh: add --seed ${HOLO_EVAL_SEED:-0} for
holographic tasks; fixes baseline validity failure at default seed=0 for
holographic_multispectral_focusing (mean_target_efficiency 0.00377 < 0.004)
- docs/baseline_validation_report_2026-04-24.md: baseline run results for 15 tasks
Co-Authored-By: Claude Sonnet 4.6 (1M context) <noreply@anthropic.com>
… compat - Add bootstrap script (scripts/bootstrap/setup_denoising_task.sh) and env.sh for repo-local viash/nextflow/JDK tooling and task_denoising checkout - Add python310_compat.patch: switch methods/magic, metrics/mse, metrics/poisson to python:3.10 base image; scprep requires pandas<2.1 which has no Python 3.12 wheels and cannot be built from source on Python 3.12 (pkg_resources missing) - Update setup_denoising_task.sh to apply python310_compat.patch automatically - Update evaluator (frontier_eval/tasks/denoising/evaluator/python.py) with full viash-build + nextflow + rank_scores pipeline; verified valid=1 - Update README.md / README_zh-CN.md: document Docker group setup, proxy config for Docker Hub access, and the Python 3.10 compatibility fix rationale Co-Authored-By: Claude Sonnet 4.6 <noreply@anthropic.com>
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🤖 AI Code Review (gemini-3-flash-preview)🇬🇧 English Analysis1. Executive Summary
2. AI Content Analysis
3. Engineering & Economic Assessment
4. Quality Assurance
5. Security & Privacy Check
🇨🇳 中文分析1. 摘要
2. AI 成分分析
3. 工程与经济评估
4. 质量保证
5. 安全与隐私检查
|
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