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add docs folder
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VincentBellavance committed Feb 14, 2023
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<title>Exploration of Sea Pens Data - 6&nbsp; Le pH</title>
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<h1 class="quarto-secondary-nav-title"><span class="chapter-number">6</span>&nbsp; <span class="chapter-title">Le pH</span></h1>
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<a href="./sea_pens_occurrence_data.html" class="sidebar-item-text sidebar-link">Occurrence</a>
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<a href="./oxygen.html" class="sidebar-item-text sidebar-link"><span class="chapter-number">1</span>&nbsp; <span class="chapter-title">Oxygène dissous</span></a>
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<a href="./salinity.html" class="sidebar-item-text sidebar-link"><span class="chapter-number">2</span>&nbsp; <span class="chapter-title">Salinité des eaux de fond</span></a>
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<a href="./temperature.html" class="sidebar-item-text sidebar-link"><span class="chapter-number">3</span>&nbsp; <span class="chapter-title">Température des eaux de fond</span></a>
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<a href="./current_velocity.html" class="sidebar-item-text sidebar-link"><span class="chapter-number">4</span>&nbsp; <span class="chapter-title">Vitesse du courant</span></a>
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<a href="./molecules.html" class="sidebar-item-text sidebar-link"><span class="chapter-number">5</span>&nbsp; <span class="chapter-title">Les éléments</span></a>
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<a href="./aragonite_ph.html" class="sidebar-item-text sidebar-link active"><span class="chapter-number">6</span>&nbsp; <span class="chapter-title">Le pH</span></a>
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<a href="./sediments.html" class="sidebar-item-text sidebar-link"><span class="chapter-number">7</span>&nbsp; <span class="chapter-title">Les sédiments</span></a>
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<a href="./bathymetry_vs_enviro.html" class="sidebar-item-text sidebar-link"><span class="chapter-number">9</span>&nbsp; <span class="chapter-title">bathymetry_vs_enviro.html</span></a>
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<h1 class="title d-none d-lg-block"><span class="chapter-number">6</span>&nbsp; <span class="chapter-title">Le pH</span></h1>
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<i class="bi bi-arrow-left-short"></i> <span class="nav-page-text"><span class="chapter-number">5</span>&nbsp; <span class="chapter-title">Les éléments</span></span>
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