adding a permutation field to the sparse matrix pattern to alleviate …

[cmhamel]

…an issue that made gpu assembly of sparse matrices fundamentally incorrect for non-linear problems.

[codecov]

Codecov Report

❌ Patch coverage is 50.00000% with 32 lines in your changes missing coverage. Please review.
✅ Project coverage is 66.03%. Comparing base (faf46e4) to head (f8ac297).
⚠️ Report is 4 commits behind head on main.

Files with missing lines	Patch %	Lines
src/integrals/Integrals.jl	4.00%	24 Missing ⚠️
src/physics/Physics.jl	0.00%	8 Missing ⚠️

Additional details and impacted files

@@            Coverage Diff             @@
##             main     #228      +/-   ##
==========================================
- Coverage   66.55%   66.03%   -0.52%     
==========================================
  Files          58       58              
  Lines        2987     3030      +43     
==========================================
+ Hits         1988     2001      +13     
- Misses        999     1029      +30     

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