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Cluster info file description
dbertran78 edited this page Jul 29, 2019
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| Column name | Description |
|---|---|
| CLUSTER_ID | cluster identifier |
| SHORT_READ_COV | average short-read coverage |
| LONG_READ_COV | average long-read coverage |
| SPECIES | closest reference species in OPERA-MS database (identified using Mash) |
| SIMILARITY | similarity with the closest reference species (identified using Mash) |
| CLUSTER_SIZE | assembly size |
| NB_CONTIG | number of contigs in the cluster |
| LONGEST_CONTIG | length of longest contig |
| N50 | assembly N50 for the cluster |
| L50 | number of contigs whose summed length is N50 |
| N90 | assembly N90 |
| L90 | number of contigs whose summed length is N90 |
| SHORT_READ_NB_CONTIG | number of contigs in the short-read only assembly |
| SHORT_READ_LONGEST_CONTIG | longest contig in the short-read only assembly |
| SHORT_READ_N50 | N50 obtained using the short-read only assembly |
| SHORT_READ_L50 | L50 obtained using the short-read only assembly |