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Issues list

Missing (440) genes in Salmon output compared to GTF file
#982 opened Feb 26, 2025 by freekvh
--numRequiredObs Exception
#981 opened Feb 17, 2025 by aminor23
Incorrect permissions on annotation GTF file cause segfault
#980 opened Feb 17, 2025 by alanhoyle
Latest release
#979 opened Feb 12, 2025 by Stikus
Doubts about using salmon quantitative results for unsupervised clustering.
#978 opened Feb 12, 2025 by xiaoguang-sjtu
Salmon Discarding A Read in Pair
#977 opened Jan 18, 2025 by ericbretz
Does lack of antisense lncRNAs in the reference affect quantification?
#976 opened Dec 18, 2024 by pasviber
Error with salmon quant when filtering alignments by MAPQ
#975 opened Dec 15, 2024 by Taylorain
best practices documentation on the ONT long reads
#974 opened Dec 9, 2024 by yinshiyi
Obtain Binary salmon builds
#973 opened Dec 3, 2024 by peterstockwell
2
minScoreFraction
#972 opened Nov 12, 2024 by hamzaaitabbou96
Segmentation fault (core dumped) in bulk mode
#971 opened Oct 31, 2024 by linyiD001
1
Compilation with LLVM fails on Linux Rocky9/Ubuntu-22.04 - stdlib incorrectly chosen
#969 opened Oct 23, 2024 by dslarm
1
Performance issue in use of boost::math::digamma on aarch64 Linux
#966 opened Oct 16, 2024 by dslarm
1
2
stl_vector.h error
#965 opened Oct 15, 2024 by fdecarpentier
ERROR: file [DRR016125_2.fastq.gz] does not appear to exist!
#963 opened Oct 1, 2024 by ElToronjas
The contents of the quant.genes.sf file and the quant.sf file are identical.
#962 opened Sep 23, 2024 by happypiggyzjx
1
Salmon quant with --recoverOrphans fails without warning
#961 opened Sep 16, 2024 by Ecas9
How to use --read-geometry when specifying start and end of the both cDNA read pairs?
#960 opened Sep 11, 2024 by pchaturvedi-takara
Suggestions on --recoverOrphans
#959 opened Sep 11, 2024 by LinearParadox
Best practice specifying library type for 10X data
#958 opened Sep 9, 2024 by TereLaguinge
ERROR: Version Server Response: Not Found; missing symbol called
#957 opened Sep 6, 2024 by abhay030592
How to use metagenomic MAGs to align metatranscriptomic reads to obtain TPMs.
#956 opened Sep 4, 2024 by zx1474
Salmon 1.10.3 build failure
#953 opened Aug 20, 2024 by davidecarlson
Question about unassigned reads when running in alignment mode
#952 opened Aug 14, 2024 by zxl124
1
ProTip! Updated in the last three days: updated:>2025-02-26.