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2 changes: 1 addition & 1 deletion docs/download_data.md
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Expand Up @@ -14,7 +14,7 @@ If the dataset is public, then the displayed FTP URL will be accessible anonymou
When logging in to the MassIVE FTP server to download private dataset files, do NOT use your own account's username and password! Doing so will take you to your own account's private FTP directory - NOT that of the dataset.

---
> For private datasets, use these FTP login credentials:<br/><br/>Username: the dataset's 9-digit MSV accession<br/>Password: the password specified in the original submission, or "a" (for anonymous) if no password was entered
> For private datasets, use these FTP login credentials:<br/><br/>Username: the dataset's 9-digit MSV accession<br/>Password: the password specified in the original submission (contact the dataset submitter to request access)

---

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10 changes: 5 additions & 5 deletions docs/make_public.md
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@@ -1,15 +1,15 @@
# Make Public


Any time after a dataset is submitted, the submitter can choose to make it public by clicking on the Make Public link near the top of the dataset page.
Any time after a dataset is submitted, the submitter can choose to make it public by clicking the "Make Public" link near the top of the dataset page.

![MassIVE_make_public](img/make_public/MassIVE_make_public.png)

When this happens, the dataset is affected in the following ways:

* It appears in [public dataset searches](access_public_datasets.md#MassIVEDatasetBrowsing-Searching) on the MassIVE web site.
* If the submitter specified a [password](#MassIVEDatasetSubmission-Privacy) for the dataset, then this password is removed, and is replaced by the anonymous password “a”.
* If the submitter checked the [Submit to ProteomeXchange](#MassIVEDatasetSubmission-Publication)” checkbox, then a ProteomeXchange announcement message is submitted, and the dataset will appear in the list of public datasets at [ProteomeCentral](http://proteomecentral.proteomexchange.org/cgi/GetDataset).
* It appears in [public dataset searches](access_public_datasets.md) on the MassIVE web site.
* The dataset's private [password](submission_workflow.md#dataset-privacy) is removed, and the dataset becomes available to download via [anonymous (public) FTP](download_data.md).
* If the submitter checked the "[Submit to ProteomeXchange](submission_workflow.md#publication-to-proteomexchange)" checkbox, then a ProteomeXchange announcement message is submitted, and the dataset will appear in the list of public datasets at [ProteomeCentral](http://proteomecentral.proteomexchange.org/cgi/GetDataset).

NOTE: dataset will be made public by administrators if a paper is published that includes the dataset accession and a member of the community requests that the specific accession be made public
NOTE: MassIVE will make a dataset public on the submitter's behalf if a paper is published that includes the dataset accession and a member of the community requests that the specific accession be made public.

4 changes: 2 additions & 2 deletions docs/reviewer_access.md
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Expand Up @@ -10,9 +10,9 @@ Username: {MSV_accession}_reviewer

Password: {*dataset*'s password - NOT the submitter's private account password!}

> **Please note that a dataset's password must be set during initial submission by entering it into the "Password" field in the dataset submission form. If this field is left blank, then the dataset will be automatically assigned the anonymous password "a". Please DO NOT share your own private account's password with reviewers. See our [dataset submission documentation](submission_workflow.md#dataset-privacy) for more details on dataset privacy and how to set this password.**
> **Please note that a dataset's password must be set during initial submission by entering it into the "Password" field in the dataset submission form. Reviewers should contact the original dataset submitter to request access. Please DO NOT share your own private account's password with reviewers. See our [dataset submission documentation](submission_workflow.md#dataset-privacy) for more details on dataset privacy and how to set this password.**

For example, if your dataset was MSV000000001, then the reviewer account username would be "MSV000000001_reviewer", and the password would be the one you entered into the initial dataset submission form, or "a" if you did not enter a password.
For example, if your dataset was MSV000000001, then the reviewer account username would be "MSV000000001_reviewer", and the password would be the one you entered into the initial dataset submission form. If you lose this password, please contact us at [[email protected]](mailto:[email protected]) to reset it.

With these credentials your reviewers can access your private dataset, and since the dataset’s files are automatically shared with this account it can also be used to run [ProteoSAFe analysis workflows](reanalyze_spectra.md) on those files for testing and review purposes.

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