fix: stub fixes

.github/workflows/build.yml

@@ -26,7 +26,9 @@ jobs:
           python-version: ${{ matrix.python-version }}
           cache: "pip"
       - name: Install nextflow
-        uses: nf-core/setup-nextflow@v1
+        uses: nf-core/setup-nextflow@v2
+        with:
+          version: "24.10.2"
       - name: Install dependencies
         run: |
           python -m pip install --upgrade pip setuptools

.tests/interval.bed

@@ -1,10 +1,10 @@
-chr1	10000	207666	. intersection ACGTmer	500	+
-chr1	257666	297968	. intersection ACGTmer	500	+
-chr1	347968	535988	. intersection ACGTmer	500	+
-chr1	585988	2702781	. intersection ACGTmer	500	+
-chr1	2746290	12954384	. intersection ACGTmer	500	+
-chr1	13004384	16799163	. intersection ACGTmer	500	+
-chr1	16849163	29552233	. intersection ACGTmer	500	+
-chr1	29553835	121976459	. intersection ACGTmer	500	+
-chr1	122026459	124977944	. intersection ACGTmer	500	+
-chr1	124978326	125130246	. intersection ACGTmer	500	+
+chr22	10510000	10784643	. intersection ACGTmer	500	+
+chr22	10834643	10874572	. intersection ACGTmer	500	+
+chr22	10924572	10966724	. intersection ACGTmer	500	+
+chr22	11016724	11068987	. intersection ACGTmer	500	+
+chr22	11118987	11160921	. intersection ACGTmer	500	+
+chr22	11210921	11378056	. intersection ACGTmer	500	+
+chr22	11428056	11497337	. intersection ACGTmer	500	+
+chr22	11547337	11631288	. intersection ACGTmer	500	+
+chr22	11681288	11724629	. intersection ACGTmer	500	+
+chr22	11774629	11977555	. intersection ACGTmer	500	+