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@BoevaLab

Boeva Lab, ETH Zurich

Computational (Epi-)genetics of Cancer

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  1. FREEC FREEC Public

    Control-FREEC: Copy number and genotype annotation in whole genome and whole exome sequencing data

    C++ 154 49

  2. ONCOCNV ONCOCNV Public

    ONCOCNV - a package to detect copy number changes in Targeted Deep Sequencing and Exome-seq data

    R 25 12

  3. LILY LILY Public

    Detection of super-enhancers in cancer data

    R 20 9

  4. SV-Bay SV-Bay Public

    Detection of structural variants in cancer mate-pair and paired-end data

    Python 12 2

  5. CancerFoundation CancerFoundation Public

    CancerFoundation: A single-cell RNA sequencing foundation model to decipher drug resistance in cancer

    Jupyter Notebook 11 1

  6. HMCan HMCan Public

    C++ 7 3

Repositories

Showing 10 of 37 repositories
  • CancerFoundation Public

    CancerFoundation: A single-cell RNA sequencing foundation model to decipher drug resistance in cancer

    BoevaLab/CancerFoundation’s past year of commit activity
    Jupyter Notebook 11 MIT 1 0 0 Updated Jan 8, 2025
  • BoevaLab/CanSig-benchmark’s past year of commit activity
    Jupyter Notebook 0 0 0 0 Updated Jan 7, 2025
  • GWAS-power Public
    BoevaLab/GWAS-power’s past year of commit activity
    Jupyter Notebook 0 0 0 0 Updated Jan 6, 2025
  • BoevaLab/single-cell-transformer-papers’s past year of commit activity
    HTML 0 36 0 0 Updated Dec 19, 2024
  • BoevaLab/ANS_supplementary_information’s past year of commit activity
    Jupyter Notebook 0 0 0 0 Updated Dec 5, 2024
  • scAugmentBench Public

    Benchmarking Self-Supervised Learning for Single-Cell Data

    BoevaLab/scAugmentBench’s past year of commit activity
    Python 5 0 0 0 Updated Oct 28, 2024
  • survboard Public
    BoevaLab/survboard’s past year of commit activity
    R 6 MIT 0 0 0 Updated Oct 28, 2024
  • MTRNA-sc-cancer Public

    Repository containing all the code necessary for reproducing the paper "Filtering cells with high mitochondrial content removes viable metabolically altered malignant cell populations in cancer single-cell studies" (Yates, Kraft, and Boeva)

    BoevaLab/MTRNA-sc-cancer’s past year of commit activity
    Jupyter Notebook 0 MIT 0 0 0 Updated Oct 15, 2024
  • FREEC Public

    Control-FREEC: Copy number and genotype annotation in whole genome and whole exome sequencing data

    BoevaLab/FREEC’s past year of commit activity
    C++ 154 49 90 10 Updated Aug 22, 2024
  • sparsesurv Public
    BoevaLab/sparsesurv’s past year of commit activity
    Python 2 BSD-3-Clause 0 6 0 Updated Jul 16, 2024

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