This repository contains code for bitwise unit cost edit distance in 15 bit, logic, and addition operations. An explanatory document is published in the Appendix of the following paper:
Loving, Joshua, Yozen Hernandez, and Gary Benson. 2014. “Bitpal: A Bit-Parallel, General Integer-Scoring Sequence Alignment Algorithm.” Bioinformatics 30 (22): 3166–73. https://doi.org/10.1093/bioinformatics/btu507.
Both the Paper and the Appendix are included in this repository.