scripts: Fix failure to find logo file.

This is necessary due to a breaking change in knitr 0.39.
BIMSBbioinfo · Jun 1, 2022 · e2c1361 · e2c1361
1 parent 8128912
commit e2c1361
Showing 1 changed file with 5 additions and 2 deletions.
diff --git a/scripts/runDeseqReport.R b/scripts/runDeseqReport.R
@@ -2,7 +2,7 @@
 #
 # Copyright © 2017 Bora Uyar <[email protected]>
 # Copyright © 2018 Jonathan Ronen <[email protected]>
-# Copyright © 2018 Ricardo Wurmus <[email protected]>
+# Copyright © 2018, 2022 Ricardo Wurmus <[email protected]>
 #
 # This file is part of the PiGx RNAseq Pipeline.
 #
@@ -74,7 +74,10 @@ runReport <- function(reportFile,
                       logo,
                       selfContained = TRUE, 
                       quiet = FALSE) {
-
+
+  # knitr 0.39 changed the default behavior.
+  options(knitr.graphics.rel_path = FALSE)
+
   outFile <- paste0(prefix, '.deseq.report.html')
 
   htmlwidgets::setWidgetIdSeed(1234)