Skip to content

Acdc 113/rems #34

New issue

Have a question about this project? Sign up for a free GitHub account to open an issue and contact its maintainers and the community.

Sign up for GitHub

By clicking “Sign up for GitHub”, you agree to our terms of service and privacy statement. We’ll occasionally send you account related emails.

Already on GitHub? Sign in to your account

Closed
flashguerdon wants to merge 3 commits into from
Closed

Acdc 113/rems #34

Show file tree
Hide file tree
Changes from all commits
Commits
Show all changes
3 commits
Select commit Hold shift + click to select a range
d16b36c
fix: rems vars
flashguerdon Jun 16, 2026
73ed2bb
fix: secret access policy
flashguerdon Jun 16, 2026
985ef89
fix: secret access policy
flashguerdon Jun 16, 2026
File filter

Filter by extension

Filter by extension
Conversations
Failed to load comments.
Loading
Jump to
Jump to file
Failed to load files.
Loading
Diff view
Diff view
140 changes: 64 additions & 76 deletions config/config.ts
View file
Open in desktop
Original file line number Diff line number Diff line change
Expand Up @@ -20,100 +20,88 @@ export interface Config {
deployEnvironment: string;
dbRetention: number;
remsTokenSecretArn: string;
ampWorkspaceId: string;
ampWorkspaceId: string;
monitoringAccountId: string;
project?: string;
owner?: string;
monitoringPrometheusRole?: string
monitoringPrometheusRole?: string;
requestorUrl: string; // URL of the Gen3 requestor service for REMS webhook callbacks
}

export function getConfig(): Config {
const deployEnv = process.env.DEPLOY_ENV || "dev";
const isProd = deployEnv === "prod" || deployEnv === "production";
const deployEnv = process.env.DEPLOY_ENV || "dev";
const isProd = deployEnv === "prod" || deployEnv === "production";

return {
project: process.env.PROJECT || "ACDC",
owner: process.env.OWNER || "biocloud",
deployEnvironment: deployEnv,
remsTokenSecretArn: process.env.REMS_TOKEN_ARN || "arn:aws:secretmanager:region:account:secret:rems-token-secret",
oidcClientSecretArn:
process.env.OIDC_SECRET_ARN ||
"arn:aws:secretmanager:region:account:secret:rems-oidc-client-secret",
accountId: process.env.CDK_ACCOUNT_ID || "000000000000",
region: process.env.CDK_REGION || "ap-southeast-2",
vpcCidr: process.env.VPC_CIDR || "192.168.0.0/24",
publicUrl: process.env.PUBLIC_URL || "https://dev-rems.example.org/",
hostName: process.env.HOST_NAME || "dev-rems.example.org",
hostZone: process.env.HOST_ZONE || "example.org",
certificateArn:
process.env.CERTIFICATE_ARN ||
"arn:aws:acm:region:account:certificate/dev",
containerImage: process.env.CONTAINER_IMAGE || "cscfi/rems:latest",
dbName: process.env.DB_NAME || "rems",
dbUser: process.env.DB_USER || "rems",
postgresVersion: getPostgresEngineVersion(
process.env.POSTGRES_VERSION || "17.4"
),
dbInstanceSize: getDBInstanceSize(
process.env.DB_INSTANCE_SIZE || "micro"
),
dbInstanceClass: getDBInstanceClass(
process.env.DB_INSTANCE_CLASS || "burstable3"
),
dbRetention: deployEnv === "prod" || deployEnv === "production" ? 30 : 7,
natGatewayCount:
deployEnv === "prod" || deployEnv === "production" ? 3 : 1,
ampWorkspaceId: process.env.AMP_WORKSPACE_ID || "ws-XXXXXXXX",
monitoringAccountId: process.env.MONITORING_ACCOUNT_ID || "000000000000",
monitoringPrometheusRole: process.env.MONITORING_PROMETHEUS_ROLE || "arn:aws:iam::123456789012:role/MonitoringAccountPrometheusRole",
};
return {
project: process.env.PROJECT || "ACDC",
owner: process.env.OWNER || "biocloud",
deployEnvironment: deployEnv,
remsTokenSecretArn: process.env.REMS_TOKEN_ARN || "arn:aws:secretmanager:region:account:secret:rems-token-secret",
oidcClientSecretArn:
process.env.OIDC_SECRET_ARN ||
"arn:aws:secretmanager:region:account:secret:rems-oidc-client-secret",
accountId: process.env.CDK_ACCOUNT_ID || "000000000000",
region: process.env.CDK_REGION || "ap-southeast-2",
vpcCidr: process.env.VPC_CIDR || "192.168.0.0/24",
publicUrl: process.env.PUBLIC_URL || "https://dev-rems.example.org/",
hostName: process.env.HOST_NAME || "dev-rems.example.org",
hostZone: process.env.HOST_ZONE || "example.org",
certificateArn:
process.env.CERTIFICATE_ARN ||
"arn:aws:acm:region:account:certificate/dev",
containerImage: process.env.CONTAINER_IMAGE || "cscfi/rems:latest",
dbName: process.env.DB_NAME || "rems",
dbUser: process.env.DB_USER || "rems",
postgresVersion: getPostgresEngineVersion(
process.env.POSTGRES_VERSION || "17.4"
),
dbInstanceSize: getDBInstanceSize(
process.env.DB_INSTANCE_SIZE || "micro"
),
dbInstanceClass: getDBInstanceClass(
process.env.DB_INSTANCE_CLASS || "burstable3"
),
dbRetention: isProd ? 30 : 7,
natGatewayCount: isProd ? 3 : 1,
ampWorkspaceId: process.env.AMP_WORKSPACE_ID || "ws-XXXXXXXX",
monitoringAccountId: process.env.MONITORING_ACCOUNT_ID || "000000000000",
monitoringPrometheusRole:
process.env.MONITORING_PROMETHEUS_ROLE ||
"arn:aws:iam::123456789012:role/MonitoringAccountPrometheusRole",
// REQUESTOR_URL env var — set per environment in CI/CD or .env:
// UAT: https://data.test.biocommons.org.au/requestor
// prod: https://commons.baker.edu.au/requestor
requestorUrl:
process.env.REQUESTOR_URL || "https://data.test.biocommons.org.au/requestor",
};
}


export function getPostgresEngineVersion(version: string): PostgresEngineVersion {
switch (version) {
case "13.20":
return PostgresEngineVersion.VER_13_20;
case "14.9":
return PostgresEngineVersion.VER_14_9;
case "15.9":
return PostgresEngineVersion.VER_15_9;
case "16.8":
return PostgresEngineVersion.VER_16_8;
case "17.4":
return PostgresEngineVersion.VER_17_4;
default:
throw new Error(`Unsupported Postgres version: ${version}`);
case "13.20": return PostgresEngineVersion.VER_13_20;
case "14.9": return PostgresEngineVersion.VER_14_9;
case "15.9": return PostgresEngineVersion.VER_15_9;
case "16.8": return PostgresEngineVersion.VER_16_8;
case "17.4": return PostgresEngineVersion.VER_17_4;
default: throw new Error(`Unsupported Postgres version: ${version}`);
}
}

export function getDBInstanceSize(
size: string
): InstanceSize {
export function getDBInstanceSize(size: string): InstanceSize {
switch (size.toLowerCase()) {
case "micro":
return InstanceSize.MICRO;
case "small":
return InstanceSize.SMALL;
case "medium":
return InstanceSize.MEDIUM;
case "large":
return InstanceSize.LARGE;;
default:
throw new Error(`Unsupported Postgres Instance size: ${size}`);
case "micro": return InstanceSize.MICRO;
case "small": return InstanceSize.SMALL;
case "medium": return InstanceSize.MEDIUM;
case "large": return InstanceSize.LARGE;
default: throw new Error(`Unsupported Postgres Instance size: ${size}`);
}
}

export function getDBInstanceClass(cls: string): InstanceClass {
switch (cls.toLowerCase()) {
case "burstable2":
return InstanceClass.BURSTABLE2;
case "burstable3":
return InstanceClass.BURSTABLE3;
case "memory":
return InstanceClass.MEMORY5;
default:
throw new Error(`Unsupported DB instance class: ${cls}`);
case "burstable2": return InstanceClass.BURSTABLE2;
case "burstable3": return InstanceClass.BURSTABLE3;
case "memory": return InstanceClass.MEMORY5;
default: throw new Error(`Unsupported DB instance class: ${cls}`);
}
}

}
Loading
Loading