feat: update results reporting and assembly manifest generation - #21

Merged

emilylm merged 11 commits into

mainfrom

May 11, 2026

Commits on May 8, 2026

feat: update assembly flow from requesting manifest to reporting results
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5db2cc0
feat: sync schema with database, update AssemblyStageRun model
emilylm
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107fe6a
feat: update versioning strategy, use json for manifests, require specimen_ids for assemblies
emilylm
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514370c

Commits on May 11, 2026

fix: update data types check, update tests, allow same specimen_id for hi-c + long read data
emilylm
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e81716d
fix: update data types check, update tests, allow same specimen_id for hi-c + long read data
emilylm
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9f87c13
feat: new data
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01f0766
feat: get all samples, experiments and reads for specimen_id
emilylm
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70389af
feat: get all samples, experiments and reads for specimen_id
emilylm
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a219de1
feat: add rna-seq data type (illumina only)
emilylm
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471c214
style: linting
emilylm
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aaf4518
feat: include qc_reads in aggregate endpoint
emilylm
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dbe44c0