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21 changes: 18 additions & 3 deletions _data/tool_and_resource_list.yml
Original file line number Diff line number Diff line change
Expand Up @@ -310,24 +310,39 @@
Type:
- Reference database
URL: https://cluster.foldseek.com/
- Description: Reference data to support AI structural biology prediction models
- Description: Reference data to support AI structural biology prediction models.
Tag: Community resource
Title: NCI Structural Biology AI Reference Collection
Type:
- Reference database
Roadmap:
- Roadmap deliverable 2
URL: https://dx.doi.org/10.25914/q48c-9a86
DOI: https://dx.doi.org/10.25914/q48c-9a86
- Description: Online tutorial covering the principles of protein architecture and function
- Description: Online tutorial covering the principles of protein architecture and function.
Tag: Community resource
Title: Foundations of protein structure tutorial
Type:
- Online tutorial
Roadmap:
- Roadmap deliverable 2 & 4
URL: https://www.ebi.ac.uk/training/online/courses/foundations-protein-structure/
DOI: https://doi.org/10.6019/tol.foundations-protein-structure-t.2026.00001.1
- Description: A limited series of webinars from 2025 that shared strategies to get the best outcomes from protein design projects.
Tag: Community resource
Title: Protein design webinar series
Type:
- Webinar series
Roadmap:
- Roadmap deliverable 2
URL: protein_design_seminars
DOI: https://doi.org/10.5281/zenodo.17626498
DOI: https://doi.org/10.5281/zenodo.17626498
- Description: A nextflow pipeline with support for numerous structure prediction tools.
Tag: Community resource
Title: nf-core ProteinFold v2.0.0
Type:
- Workflow
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Roadmap:
- Roadmap deliverable 3
URL: nfcore_proteinfold
DOI: https://doi.org/10.5281/zenodo.7437037
11 changes: 10 additions & 1 deletion _includes/resource-table-category.html
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Expand Up @@ -35,7 +35,16 @@
{%- else %}
<td>{{tool.Title}}</td>
{%- endif %}
<td>{{tool.Description}}</td>
<td>
{{tool.Description}}
{% if tool.Roadmap %}
{%- for type in tool.Roadmap %}
<button class="btn btn-light badge border border-dark text-dark mb-2 text-wrap text-center topic-badge">
{{type}}
</button>
{%- endfor %}
{%- endif %}
</td>
{% if tool.DOI%}
<td><a href="{{tool.DOI}}">DOI</a></td>
{%- else %}
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2 changes: 1 addition & 1 deletion pages/activities/ebi_module_dev.md
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@@ -1,7 +1,7 @@
---
title: EMBL-EBI Foundations of Protein Structure module development
description: Developing the content for an online EMBL-EBI tutorial covering the principles of protein architecture and function.
type: Activity_in_progress
type: Completed_activity
roadmap_category: Global-connections
contributors: [Jennifer Fleming, Kristina Gagalova, Johan Gustafsson, Michael Healy, Thomas Litfin, Paulyna Magaña, Katharine Michie]
toc: false
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14 changes: 8 additions & 6 deletions pages/activities/nfcore_proteinfold.md
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@@ -1,14 +1,19 @@
---
title: nf-core ProteinFold v2.0 Release
description: Contribute towards, and locally deploy, v2.0 of nf-core ProteinFold workflow.
type: Activity_in_progress
title: nf-core ProteinFold v2.0.0 Release
description: Contribute towards, and locally deploy, v2.0.0 of nf-core ProteinFold workflow.
type: Completed_activity
roadmap: A shared platform, or platforms (Roadmap D3A)
roadmap_category: Shared-platform
contributors: [Ziad Al-Bkhetan, Mitchell O'Brien, Joshua Storm Caley, Keiran Rowell, Thomas Litfin]
toc: false
redirect_from: /website/nfcore_proteinfold
tiles:
- title: "See version 2.0.0 of the nf-core/proteinfold workflow"
url: https://nf-co.re/proteinfold/2.0.0/
---

{% include tiles-simple.html target = "tiles" col = "1" %}

## Details

- Molecular structure prediction tools require large reference databases and varied computational infrastructure.
Expand All @@ -34,7 +39,4 @@ redirect_from: /website/nfcore_proteinfold
- Add miniature reference databases for fast troubleshooting.
- Update documentation and metro-map.
- Test for release.

### In Progress

- Review workflow outputs for all modes.
29 changes: 29 additions & 0 deletions pages/activities/website_dev.md
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@@ -0,0 +1,29 @@
---
title: Community website
description: Development and maintenance of the Australian Structural Biology Computing (ASBC) community website.
type: Activity_in_progress
roadmap_category: Community-space
contributors: [Johan Gustafsson, Thomas Litfin, Kate Michie]
toc: false
---

## Details


### Completed

- Initial version of the website
- Mechanisms for joining the community
- Streamlined appearance and mechanics for all pages


### In Progress

- Sharing mechanism for computational workflows
- Adding contributors


### Future

- Sharing mechanism for events
- Sharing mechanism for both community resources and external resources
2 changes: 1 addition & 1 deletion pages/resources/structure_prediction.md
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@@ -1,5 +1,5 @@
---
title: Structure Prediction
title: Structure prediction
Comment thread
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page_id: external_structure_prediction
datatable: true
toc: false
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