remove mamba conda frontend specification

"Support for alternative conda frontends has been deprecated in favor of simpler support and code base. This should not cause issues since current conda releases rely on fast solving via libmamba."
AroneyS · Nov 25, 2024 · ae52d88 · ae52d88
1 parent 1744492
commit ae52d88
Showing 1 changed file with 1 addition and 1 deletion.
diff --git a/binchicken/binchicken.py b/binchicken/binchicken.py
@@ -104,7 +104,7 @@ def read_list(path):
 
 def run_workflow(config, workflow, output_dir, cores=16, dryrun=False,
                  profile=None, local_cores=1, cluster_retries=None,
-                 snakemake_args="", conda_frontend="mamba", conda_prefix=None):
+                 snakemake_args="", conda_frontend=None, conda_prefix=None):
     load_configfile(config)
 
     cmd = (