add conda for count_bp_reads

AroneyS · Dec 16, 2024 · 4c79adb · 4c79adb
1 parent 904afae
commit 4c79adb
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diff --git a/binchicken/workflow/coassemble.smk b/binchicken/workflow/coassemble.smk
@@ -354,6 +354,8 @@ rule count_bp_reads:
     resources:
         mem_mb=get_mem_mb,
         runtime = get_runtime(base_hours = 24),
+    conda:
+        "env/general.yml"
     shell:
         "parallel -k -j {threads} "
         "echo -n {{1}}, '&&' "

diff --git a/binchicken/workflow/env/general.yml b/binchicken/workflow/env/general.yml
@@ -0,0 +1,6 @@
+channels:
+  - conda-forge
+  - bioconda
+dependencies:
+  - python=3.10.*
+  - parallel=20230522