add logo attribution #358
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| name: Test Bin Chicken with Setup-Miniconda From Marketplace | |
| on: [push] | |
| jobs: | |
| miniconda: | |
| name: Miniconda ${{ matrix.os }} | |
| runs-on: ubuntu-latest | |
| defaults: | |
| run: | |
| shell: bash -l {0} | |
| strategy: | |
| matrix: | |
| python-version: ["3.10"] | |
| steps: | |
| - uses: actions/checkout@v2 | |
| - name: Set up environment with Python ${{ matrix.python-version }} | |
| uses: conda-incubator/setup-miniconda@v2 | |
| with: | |
| activate-environment: test | |
| environment-file: binchicken.yml | |
| python-version: ${{ matrix.python-version }} | |
| auto-activate-base: false | |
| channels: conda-forge,bioconda | |
| channel-priority: true | |
| - run: | | |
| conda info | |
| conda list | |
| conda config --set channel_priority strict | |
| # Workaround to provide additional free space for testing. | |
| # https://github.com/actions/virtual-environments/issues/2840 | |
| sudo rm -rf /usr/share/dotnet | |
| sudo rm -rf /opt/ghc | |
| sudo rm -rf "/usr/local/share/boost" | |
| sudo rm -rf "$AGENT_TOOLSDIRECTORY" | |
| - name: Install Bin Chicken | |
| run: | | |
| pip install -e . | |
| - name: Run unit tests | |
| run: | | |
| python test/test_query_processing.py -b | |
| python test/test_sketch_samples.py -b | |
| python test/test_abundance_weighting.py -b | |
| python test/test_target_elusive.py -b | |
| python test/test_target_weighting.py -b | |
| python test/test_cluster_graph.py -b | |
| python test/test_collect_reference_bins.py -b | |
| python test/test_summarise_coassemblies.py -b | |
| python test/test_no_genomes.py -b | |
| python test/test_aviary_commands.py | |
| python test/test_is_interleaved.py | |
| python test/test_build.py | |
| python test/test_update.py | |
| python test/test_evaluate.py | |
| python test/test_evaluate_script.py -b | |
| python test/test_coassemble.py | |
| python test/test_iterate.py |