Migrating additional content from UI demos to Quarto demos #8
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| The following sections describe the contents of these folders and files in more detail. | ||
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| ### Traits |
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should we keep documentation on trait analysis here as we are not doing trait analysis in this workflow
| The Rdata files **trait.data.Rdata** and **jagged.data.Rdata** are, respectively, the available trait data extracted from the database that was used to estimate the model parameters and that same data cleaned and formatted for the statistical code. The **list of variables that are queried is determined by what variables have priors associated with them in the definition of the PFTs**. Priors are output into **prior.distns.Rdata**. Likewise, the **list of species that are associated with a PFT determines what subset of data is extracted** out of all data matching a given variable name. Demo 3 will demonstrate how a PFT can be created or modified. To look at these files in RStudio **click on these files to load them into your workspace**. You can further examine them in the _Environment_ window or accessing them at the command line. For example, try typing ```names(trait.data)``` as this will tell you what variables were extracted, ```names(trait.data$Amax)``` will tell you the names of the columns in the Amax table, and ```summary(trait.data$Amax)``` will give you summary data about the Amax values. | ||
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| ### META-ANALYSIS: |
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same here also,as we are not doing meta analysis in this notebook , should we keep comment on meta analysis?
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Apologies for the oversight. These can be moved to the uncertainty.qmd
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even in the uncertainty notebook as we are not doing trait and meta analysis,we are just doing uncertainty analysis i.e. ensemble and sensivity analysis,can we remove that trait and meta analysis comments part from both of the notebook?
documentation/tutorials/Demo_02_Uncertainty_Analysis/uncertainty.qmd
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| **The `/pft` directory** contains an array of outputs available that are related to the process of estimating the model parameters. | ||
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| The Rdata files **trait.data.Rdata** and **jagged.data.Rdata** are, respectively, the available trait data extracted from the database that was used to estimate the model parameters and that same data cleaned and formatted for the statistical code. The **list of variables that are queried is determined by what variables have priors associated with them in the definition of the PFTs**. Priors are output into **prior.distns.Rdata**. Likewise, the **list of species that are associated with a PFT determines what subset of data is extracted** out of all data matching a given variable name. Demo 3 will demonstrate how a PFT can be created or modified. To look at these files in RStudio **click on these files to load them into your workspace**. You can further examine them in the _Environment_ window or accessing them at the command line. For example, try typing ```names(trait.data)``` as this will tell you what variables were extracted, ```names(trait.data$Amax)``` will tell you the names of the columns in the Amax table, and ```summary(trait.data$Amax)``` will give you summary data about the Amax values. |
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As we are not using database in this notebook,i believe it is safe to remove this part.
AritraDey-Dev
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Oct 21, 2025
AritraDey-Dev
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Getting closer!
Finishing up PecanProject#3570, I moved additional details from the original demos to the new quarto demos.
We are getting closer, @AritraDey-Dev, before merging please review to check that the updated demos: