Updated docker config files from

https://github.com/taniwallach/ww_docker_config_sets/tree/master/WW-2.14-ubuntu_16.04
which overcome several issues:
  * docker-compose.yml: MariaDB on Dockers CE for Windows cannot function with bind mounted /var/lib/mysql at least with the default settings. Using a named volume for the persistent storage instead.
  * Dockerfile: Hardwired the PG branch (@mgage) and merge ENV lines (@nmoller), and additional reorganization
  * docker-entrypoint.sh: Create modelCourse directory and automatically run OPL-update on initial container startup, misc additional start-up time actions (@taniwallach)
  * Add some additional files to .dockerignore
  * PG_VERSION as a file, to match what the Dockerfile uses, so that the symbolic link cannot cause trouble/confusion in Docker installs.

.dockerignore

@@ -1,6 +1,10 @@
 Dockerfile
 logs/*
 tmp/*
+htdocs/tmp/*
+htdocs/DATA/library*.json
+htdocs/DATA/tagging-taxonomy.json
+htdocs/DATA/textbooks-tree.json
 .git
 .data
 .idea

Dockerfile

@@ -1,29 +1,31 @@
 FROM ubuntu:16.04
 
-ENV WEBWORK_URL /webwork2
-ENV WEBWORK_ROOT_URL http://localhost
-ENV WEBWORK_DB_HOST db
-ENV WEBWORK_DB_PORT 3306
-ENV WEBWORK_DB_NAME webwork
-ENV WEBWORK_DB_DSN DBI:mysql:${WEBWORK_DB_NAME}:${WEBWORK_DB_HOST}:${WEBWORK_DB_PORT}
-ENV WEBWORK_DB_USER webworkWrite
-ENV WEBWORK_DB_PASSWORD passwordRW
-ENV WEBWORK_SMTP_SERVER localhost
-ENV WEBWORK_SMTP_SENDER [email protected]
-ENV WEBWORK_TIMEZONE America/New_York
-ENV APACHE_RUN_USER www-data
-ENV APACHE_RUN_GROUP www-data
-# temporary state file location. This might be changed to /run in Wheezy+1
-ENV APACHE_PID_FILE /var/run/apache2/apache2.pid
-ENV APACHE_RUN_DIR /var/run/apache2
-ENV APACHE_LOCK_DIR /var/lock/apache2
-# Only /var/log/apache2 is handled by /etc/logrotate.d/apache2.
-ENV APACHE_LOG_DIR /var/log/apache2
-ENV APP_ROOT /opt/webwork
-ENV WEBWORK_ROOT $APP_ROOT/webwork2
-ENV PG_ROOT $APP_ROOT/pg
-ENV DEV 0
-
+ENV PG_BRANCH=rel-PG-2.14 \
+    WEBWORK_URL=/webwork2 \
+    WEBWORK_ROOT_URL=http://localhost \
+    WEBWORK_DB_HOST=db \
+    WEBWORK_DB_PORT=3306 \
+    WEBWORK_DB_NAME=webwork \
+    WEBWORK_DB_USER=webworkWrite \
+    WEBWORK_DB_PASSWORD=passwordRW \
+    WEBWORK_SMTP_SERVER=localhost \
+    [email protected] \
+    WEBWORK_TIMEZONE=America/New_York \
+    APACHE_RUN_USER=www-data \
+    APACHE_RUN_GROUP=www-data \
+    # temporary state file location. This might be changed to /run in Wheezy+1 \
+    APACHE_PID_FILE=/var/run/apache2/apache2.pid \
+    APACHE_RUN_DIR=/var/run/apache2 \
+    APACHE_LOCK_DIR=/var/lock/apache2 \
+    # Only /var/log/apache2 is handled by /etc/logrotate.d/apache2.
+    APACHE_LOG_DIR=/var/log/apache2 \
+    APP_ROOT=/opt/webwork \
+    DEV=0
+
+ENV WEBWORK_DB_DSN=DBI:mysql:${WEBWORK_DB_NAME}:${WEBWORK_DB_HOST}:${WEBWORK_DB_PORT} \
+    WEBWORK_ROOT=$APP_ROOT/webwork2 \
+    PG_ROOT=$APP_ROOT/pg \
+    PATH=$PATH:$APP_ROOT/webwork2/bin
 
 RUN apt-get update \
     && apt-get install -y --no-install-recommends --no-install-suggests \
@@ -78,35 +80,40 @@ RUN apt-get update \
 
 RUN mkdir -p $APP_ROOT/courses $APP_ROOT/libraries $APP_ROOT/webwork2
 
-COPY VERSION /tmp
-
-RUN WEBWORK_VERSION=`cat /tmp/VERSION|sed -n 's/.*\(develop\)'\'';/\1/p' && cat /tmp/VERSION|sed -n 's/.*\([0-9]\.[0-9]*\)'\'';/PG\-\1/p'` \
-    && curl -fSL https://github.com/openwebwork/pg/archive/${WEBWORK_VERSION}.tar.gz -o /tmp/${WEBWORK_VERSION}.tar.gz \
-    && tar xzf /tmp/${WEBWORK_VERSION}.tar.gz \
-    && mv pg-${WEBWORK_VERSION} $APP_ROOT/pg \
-    && rm /tmp/${WEBWORK_VERSION}.tar.gz \
+# Block to include webwork2 in the container, when needed, instead of  getting it from a bind mount.
+#    Uncomment when needed, and set the correct branch name on the following line.
+#ENV WEBWORK_BRANCH=rel-ww2.14   # need a valid branch name from https://github.com/openwebwork/webwork2
+#RUN curl -fSL https://github.com/openwebwork/webwork2/archive/${WEBWORK_BRANCH}.tar.gz -o /tmp/${WEBWORK_BRANCH}.tar.gz \
+#    && cd /tmp \
+#    && tar xzf /tmp/${WEBWORK_BRANCH}.tar.gz \
+#    && mv webwork2-${WEBWORK_BRANCH} $APP_ROOT/webwork2 \
+#    && rm -rf /tmp/${WEBWORK_BRANCH}.tar.gz /tmp/webwork2-${WEBWORK_BRANCH}
+
+RUN curl -fSL https://github.com/openwebwork/pg/archive/${PG_BRANCH}.tar.gz -o /tmp/${PG_BRANCH}.tar.gz \
+    && tar xzf /tmp/${PG_BRANCH}.tar.gz \
+    && mv pg-${PG_BRANCH} $APP_ROOT/pg \
+    && rm /tmp/${PG_BRANCH}.tar.gz \
     && curl -fSL https://github.com/openwebwork/webwork-open-problem-library/archive/master.tar.gz -o /tmp/opl.tar.gz \
     && tar xzf /tmp/opl.tar.gz \
     && mv webwork-open-problem-library-master $APP_ROOT/libraries/webwork-open-problem-library \
     && rm /tmp/opl.tar.gz \
     && curl -fSL https://github.com/mathjax/MathJax/archive/master.tar.gz -o /tmp/mathjax.tar.gz \
     && tar xzf /tmp/mathjax.tar.gz \
     && mv MathJax-master $APP_ROOT/MathJax \
-    && rm /tmp/mathjax.tar.gz \
-    && rm /tmp/VERSION
-    #curl -fSL https://github.com/openwebwork/webwork2/archive/WeBWorK-${WEBWORK_VERSION}.tar.gz -o /tmp/WeBWorK-${WEBWORK_VERSION}.tar.gz \
-    #&& tar xzf /tmp/WeBWorK-${WEBWORK_VERSION}.tar.gz \
-    #&& mv webwork2-WeBWorK-${WEBWORK_VERSION} $APP_ROOT/webwork2 \
-    #&& rm /tmp/WeBWorK-${WEBWORK_VERSION}.tar.gz \
+    && rm /tmp/mathjax.tar.gz 
+
 
 RUN echo "PATH=$PATH:$APP_ROOT/webwork2/bin" >> /root/.bashrc
 
 COPY . $APP_ROOT/webwork2
 
-RUN cd $APP_ROOT/webwork2/courses.dist \
-    && cp *.lst $APP_ROOT/courses/ \
-    && cp -R modelCourse $APP_ROOT/courses/ \
-    && cd $APP_ROOT/pg/lib/chromatic \
+# Move these lines into docker-entrypoint.sh so the bind mount of courses
+# will be available
+#RUN cd $APP_ROOT/webwork2/courses.dist \
+#    && cp *.lst $APP_ROOT/courses/ \
+#    && cp -R modelCourse $APP_ROOT/courses/
+
+RUN cd $APP_ROOT/pg/lib/chromatic \
     && gcc color.c -o color
 
 # setup apache

PG_VERSION

@@ -0,0 +1,4 @@
+$PG_VERSION  ='PG-2.14';
+$PG_COPYRIGHT_YEARS = '1996-2018';
+
+1;

docker-compose.yml

@@ -3,7 +3,7 @@ services:
   db:
     image: mariadb:10.1
     volumes:
-      - "./.data/db:/var/lib/mysql"
+      - mysql:/var/lib/mysql
     restart: always
     environment:
       MYSQL_ROOT_PASSWORD: randomepassword
@@ -31,3 +31,5 @@ services:
     image: ubcctlt/rserve
     ports:
       - "6311:6311"
+volumes:
+  mysql:

docker-entrypoint.sh

@@ -37,6 +37,29 @@ if [ "$1" = 'apache2' ]; then
         chown www-data:root -R $APP_ROOT/courses
         echo "Admin course is created."
     fi
+    # modelCourses link if not existing
+    if [ ! -d "$APP_ROOT/courses/modelCourse" ]; then
+      echo "create modelCourse subdirectory"
+      rm -rf $APP_ROOT/courses/modelCourse
+      cd $APP_ROOT/webwork2/courses.dist
+      cp -R modelCourse $APP_ROOT/courses/
+    fi
+    # defaultClasslist.lst and adminClasslist.lst files if not existing
+    if [ ! -f "$APP_ROOT/courses/defaultClasslist.lst"  ]; then
+      echo "defaultClasslist.lst is being created"
+      cd $APP_ROOT/webwork2/courses.dist
+      cp *.lst $APP_ROOT/courses/
+    fi
+    if [ ! -f "$APP_ROOT/courses/adminClasslist.lst"  ]; then
+      echo "adminClasslist.lst is being created"
+      cd $APP_ROOT/webwork2/courses.dist
+      cp *.lst $APP_ROOT/courses/
+    fi
+    # run OPL-update if necessary
+    if [ ! -f "$APP_ROOT/webwork2/htdocs/DATA/tagging-taxonomy.json"  ]; then
+      cd $APP_ROOT/webwork2/bin
+      ./OPL-update
+    fi
     # generate apache2 reload config if needed
     if [ $DEV -eq 1 ]; then
         echo "PerlModule Apache2::Reload" > /etc/apache2/conf-enabled/apache2-reload.conf
@@ -45,6 +68,10 @@ if [ "$1" = 'apache2' ]; then
     else
         rm -f /etc/apache2/conf-enabled/apache2-reload.conf
     fi
+    # Fix possible permission issues
+    cd $APP_ROOT/webwork2
+    chown -R www-data logs tmp DATA htdocs/tmp ../courses
+    chmod -R u+w logs tmp DATA htdocs/tmp ../courses
 fi
 
 exec "$@"