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Flagging 39 CCRCC cases as "Non-CCRCC Rare"
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* These are kidney specimens, not CCRCC, retained for ad hoc study
* Based on discussion with Mathangi and Ana
* Work dir: shiso:/Users/mwyczalk/Projects/CPTAC3/CPTAC3.Cases/20210820.CPTAC3_Cohorts
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@mwyczalkowski
mwyczalkowski committed Aug 25, 2021
1 parent fbddf51 commit d0be76b
Showing 1 changed file with 39 additions and 39 deletions.
78 changes: 39 additions & 39 deletions CPTAC3.cases.dat
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Original file line number Diff line number Diff line change
Expand Up @@ -236,7 +236,7 @@ C3L-00604 LUAD Discovery
C3L-00605 UCEC Discovery
C3L-00606 CCRCC Discovery
C3L-00607 CCRCC Discovery
C3L-00608 CCRCC
C3L-00608 CCRCC Non-CCRCC Rare
C3L-00609 CCRCC
C3L-00610 CCRCC Discovery
C3L-00614 AML Discovery
Expand Down Expand Up @@ -296,7 +296,7 @@ C3L-00791 CCRCC Discovery
C3L-00792 CCRCC Discovery
C3L-00793 CCRCC
C3L-00794 CCRCC
C3L-00795 CCRCC
C3L-00795 CCRCC Non-CCRCC Rare
C3L-00796 CCRCC Discovery
C3L-00797 CCRCC
C3L-00798 CCRCC
Expand Down Expand Up @@ -557,18 +557,18 @@ C3L-01454 LUAD
C3L-01455 LSCC Discovery
C3L-01456 PDA
C3L-01457 CCRCC
C3L-01458 CCRCC
C3L-01458 CCRCC Non-CCRCC Rare
C3L-01459 CCRCC Confirmatory
C3L-01460 CCRCC
C3L-01461 CCRCC
C3L-01460 CCRCC Non-CCRCC Rare
C3L-01461 CCRCC Non-CCRCC Rare
C3L-01462 CCRCC Confirmatory
C3L-01463 CCRCC
C3L-01463 CCRCC Non-CCRCC Rare
C3L-01464 CCRCC Confirmatory
C3L-01465 CCRCC Confirmatory
C3L-01466 SAR
C3L-01467 CCRCC
C3L-01467 CCRCC Non-CCRCC Rare
C3L-01468 CCRCC
C3L-01469 CCRCC
C3L-01469 CCRCC Non-CCRCC Rare
C3L-01470 CCRCC Confirmatory
C3L-01480 AML
C3L-01551 SAR Discovery
Expand All @@ -578,7 +578,7 @@ C3L-01554 CCRCC
C3L-01555 CCRCC
C3L-01556 CCRCC
C3L-01557 CCRCC Discovery
C3L-01558 CCRCC
C3L-01558 CCRCC Non-CCRCC Rare
C3L-01559 CCRCC
C3L-01560 CCRCC Discovery
C3L-01571 SAR
Expand Down Expand Up @@ -696,7 +696,7 @@ C3L-01840 UCEC Confirmatory
C3L-01861 CCRCC Discovery
C3L-01862 LUAD Discovery
C3L-01864 UCEC Confirmatory
C3L-01865 CCRCC
C3L-01865 CCRCC Non-CCRCC Rare
C3L-01866 CCRCC
C3L-01867 SAR
C3L-01868 GBM
Expand Down Expand Up @@ -733,16 +733,16 @@ C3L-01928 GBM
C3L-01929 CCRCC Confirmatory
C3L-01951 CCRCC Confirmatory
C3L-01952 CCRCC Confirmatory
C3L-01953 CCRCC
C3L-01953 CCRCC Non-CCRCC Rare
C3L-01954 CCRCC Confirmatory
C3L-01955 CCRCC
C3L-01955 CCRCC Non-CCRCC Rare
C3L-01956 CM
C3L-01957 CCRCC
C3L-01958 CCRCC Confirmatory
C3L-01959 SAR
C3L-01960 CCRCC
C3L-01960 CCRCC Non-CCRCC Rare
C3L-01961 CCRCC
C3L-01962 CCRCC
C3L-01962 CCRCC Non-CCRCC Rare
C3L-01963 CCRCC Confirmatory
C3L-01964 LUAD
C3L-01965 CCRCC
Expand Down Expand Up @@ -826,20 +826,20 @@ C3L-02175 CCRCC Confirmatory
C3L-02176 CCRCC Confirmatory
C3L-02177 CCRCC Confirmatory
C3L-02178 CCRCC
C3L-02179 CCRCC
C3L-02179 CCRCC Non-CCRCC Rare
C3L-02180 CCRCC
C3L-02201 CCRCC Confirmatory
C3L-02202 CCRCC Confirmatory
C3L-02203 SAR
C3L-02204 CCRCC
C3L-02204 CCRCC Non-CCRCC Rare
C3L-02205 CCRCC
C3L-02206 CCRCC
C3L-02207 CCRCC
C3L-02208 CCRCC Confirmatory
C3L-02209 CCRCC
C3L-02210 CCRCC
C3L-02210 CCRCC Non-CCRCC Rare
C3L-02211 CCRCC Confirmatory
C3L-02212 CCRCC
C3L-02212 CCRCC Non-CCRCC Rare
C3L-02213 SAR
C3L-02214 CCRCC Confirmatory
C3L-02215 PDA
Expand Down Expand Up @@ -1075,9 +1075,9 @@ C3L-02854 SAR
C3L-02855 SAR
C3L-02856 CCRCC Confirmatory
C3L-02857 CCRCC Confirmatory
C3L-02858 CCRCC
C3L-02858 CCRCC Non-CCRCC Rare
C3L-02859 CCRCC
C3L-02860 CCRCC
C3L-02860 CCRCC Non-CCRCC Rare
C3L-02872 PDA
C3L-02878 PDA
C3L-02881 PDA
Expand Down Expand Up @@ -2613,7 +2613,7 @@ C3N-00229 LSCC Confirmatory
C3N-00236 UCEC
C3N-00238 UCEC
C3N-00242 CCRCC Discovery
C3N-00243 CCRCC
C3N-00243 CCRCC Non-CCRCC Rare
C3N-00244 CCRCC Discovery
C3N-00246 CCRCC Discovery
C3N-00247 LSCC Discovery
Expand Down Expand Up @@ -2692,9 +2692,9 @@ C3N-00434 CM
C3N-00435 CCRCC Discovery
C3N-00436 PDA
C3N-00437 CCRCC Discovery
C3N-00438 CCRCC
C3N-00439 CCRCC
C3N-00440 CCRCC
C3N-00438 CCRCC Non-CCRCC Rare
C3N-00439 CCRCC Non-CCRCC Rare
C3N-00440 CCRCC Non-CCRCC Rare
C3N-00466 AML Discovery
C3N-00467 AML
C3N-00468 AML
Expand All @@ -2715,7 +2715,7 @@ C3N-00492 CCRCC Discovery
C3N-00493 CCRCC
C3N-00494 CCRCC Discovery
C3N-00495 CCRCC Discovery
C3N-00496 CCRCC
C3N-00496 CCRCC Non-CCRCC Rare
C3N-00497 LSCC Discovery
C3N-00498 HNSCC Discovery_B
C3N-00499 HNSCC
Expand Down Expand Up @@ -2846,7 +2846,7 @@ C3N-00831 CCRCC Discovery
C3N-00832 CCRCC Discovery
C3N-00833 CCRCC
C3N-00834 CCRCC Discovery
C3N-00835 CCRCC
C3N-00835 CCRCC Non-CCRCC Rare
C3N-00836 UCEC Discovery
C3N-00837 SAR
C3N-00838 CM
Expand Down Expand Up @@ -2896,7 +2896,7 @@ C3N-00953 CCRCC Discovery
C3N-00954 PDA Discovery
C3N-00955 LUAD
C3N-00957 PDA Discovery
C3N-00958 CCRCC
C3N-00958 CCRCC Non-CCRCC Rare
C3N-00959 LUAD Discovery
C3N-01001 UCEC
C3N-01002 SAR
Expand Down Expand Up @@ -2964,7 +2964,7 @@ C3N-01173 UCEC
C3N-01174 UCEC
C3N-01175 CCRCC Discovery
C3N-01176 CCRCC Discovery
C3N-01177 CCRCC
C3N-01177 CCRCC Non-CCRCC Rare
C3N-01178 CCRCC Discovery
C3N-01179 CCRCC Discovery
C3N-01180 CCRCC Discovery
Expand Down Expand Up @@ -2997,7 +2997,7 @@ C3N-01266 UCEC
C3N-01267 UCEC Discovery
C3N-01268 CM
C3N-01269 HNSCC
C3N-01270 CCRCC
C3N-01270 CCRCC Non-CCRCC Rare
C3N-01331 TBD
C3N-01332 TBD
C3N-01333 TBD
Expand All @@ -3019,7 +3019,7 @@ C3N-01348 UCEC
C3N-01349 UCEC Discovery
C3N-01350 UCEC
C3N-01361 CCRCC Discovery
C3N-01362 CCRCC
C3N-01362 CCRCC Non-CCRCC Rare
C3N-01363 CCRCC
C3N-01364 GBM Discovery
C3N-01365 GBM
Expand Down Expand Up @@ -3132,10 +3132,10 @@ C3N-01646 CCRCC Discovery
C3N-01647 CCRCC
C3N-01648 CCRCC Discovery
C3N-01649 CCRCC Discovery
C3N-01650 CCRCC
C3N-01650 CCRCC Non-CCRCC Rare
C3N-01651 CCRCC Discovery
C3N-01652 CCRCC
C3N-01653 CCRCC
C3N-01652 CCRCC Non-CCRCC Rare
C3N-01653 CCRCC Non-CCRCC Rare
C3N-01654 CCRCC Confirmatory
C3N-01655 CCRCC Confirmatory
C3N-01656 CCRCC Confirmatory
Expand Down Expand Up @@ -3183,7 +3183,7 @@ C3N-01799 LUAD Discovery
C3N-01800 UCEC
C3N-01801 UCEC
C3N-01802 UCEC Discovery
C3N-01803 CCRCC
C3N-01803 CCRCC Non-CCRCC Rare
C3N-01806 CCRCC Confirmatory
C3N-01808 CCRCC Discovery
C3N-01809 GBM
Expand Down Expand Up @@ -3245,8 +3245,8 @@ C3N-01899 PDA
C3N-01900 PDA Discovery
C3N-01901 CCRCC
C3N-01902 CCRCC Confirmatory
C3N-01903 CCRCC
C3N-01904 CCRCC
C3N-01903 CCRCC Non-CCRCC Rare
C3N-01904 CCRCC Non-CCRCC Rare
C3N-01905 CCRCC Confirmatory
C3N-01906 PDA
C3N-01907 PDA Discovery
Expand Down Expand Up @@ -3391,7 +3391,7 @@ C3N-02257 GBM
C3N-02258 GBM
C3N-02259 GBM Confirmatory
C3N-02260 GBM
C3N-02261 CCRCC
C3N-02261 CCRCC Non-CCRCC Rare
C3N-02262 CCRCC Confirmatory
C3N-02263 CCRCC Confirmatory
C3N-02264 CCRCC Confirmatory
Expand Down Expand Up @@ -3479,7 +3479,7 @@ C3N-02436 UCEC Confirmatory
C3N-02437 UCEC Confirmatory
C3N-02438 GBM
C3N-02439 CCRCC Confirmatory
C3N-02440 CCRCC
C3N-02440 CCRCC Non-CCRCC Rare
C3N-02451 LUAD Confirmatory
C3N-02452 UCEC
C3N-02453 PDA
Expand Down Expand Up @@ -3613,7 +3613,7 @@ C3N-02811 CCRCC Confirmatory
C3N-02814 CCRCC
C3N-02815 LSCC
C3N-02816 LSCC
C3N-02818 CCRCC
C3N-02818 CCRCC Non-CCRCC Rare
C3N-02825 LUAD
C3N-02826 LUAD
C3N-02827 LUAD
Expand Down

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