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Importing 7 PDA normal cases as part of batch PDA-normal.20200903
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* Work directory: /home/mwyczalk_test/Projects/CPTAC3/import.Y3/PDA-normal.20200903
* Ad hoc request "RNAseq from normal pancreatic duct"
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mwyczalkowski committed Sep 3, 2020
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14 changes: 14 additions & 0 deletions BamMap/katmai.BamMap.dat
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Expand Up @@ -5294,6 +5294,8 @@ C3L-03497.MethArray.Green.Tbm C3L-03497 AML Methylation Array tumor_bone_marrow
C3L-03497.MethArray.Red.Tbm C3L-03497 AML Methylation Array tumor_bone_marrow /diskmnt/Projects/cptac_downloads_7/GDC_import/data/210aca49-9a20-4fe1-8918-d62e8bbee628/203561450054_R05C01_Red.idat 13676216 IDAT NA 210aca49-9a20-4fe1-8918-d62e8bbee628 katmai
C3L-03497.miRNA-Seq.Tbm C3L-03497 AML miRNA-Seq tumor_bone_marrow /diskmnt/Projects/cptac_downloads_7/GDC_import/data/de354781-b2f8-47f2-9ba6-ec57bd73e5a1/190508_UNC31-K00269_0215_BH7FYKBBXY_CATGGC_S34_L002_R1_001.unaln.bam 189795844 BAM NA de354781-b2f8-47f2-9ba6-ec57bd73e5a1 katmai
C3L-03497.RNA-Seq.genomic.Tbm.hg38 C3L-03497 AML RNA-Seq tumor_bone_marrow /diskmnt/Projects/cptac/GDC_import/data/4cd093b4-3dde-445d-96fc-c411f7b7a5b0/5af1d3d2-4103-4db1-9a22-352d8261cdd0.rna_seq.genomic.gdc_realn.bam 8669024564 BAM hg38 4cd093b4-3dde-445d-96fc-c411f7b7a5b0 katmai
C3L-03513.RNA-Seq.R1.A C3L-03513 PDA RNA-Seq tissue_normal /diskmnt/Projects/cptac/GDC_import/data/30c65fa6-6f8c-41cc-ae25-6089adc93750/200731_UNC31-K00269_0286_AHHWJ2BBXY_CAACAATG-CTTCACGG_S6_L002_R1_001.fastq.gz 4012444445 FASTQ NA 30c65fa6-6f8c-41cc-ae25-6089adc93750 katmai
C3L-03513.RNA-Seq.R2.A C3L-03513 PDA RNA-Seq tissue_normal /diskmnt/Projects/cptac/GDC_import/data/4f9e894b-8949-486f-ae58-ee15c1d111bf/200731_UNC31-K00269_0286_AHHWJ2BBXY_CAACAATG-CTTCACGG_S6_L002_R2_001.fastq.gz 4410946219 FASTQ NA 4f9e894b-8949-486f-ae58-ee15c1d111bf katmai
C3L-03589.MethArray.Green.T C3L-03589 UCEC Methylation Array tumor /diskmnt/Projects/cptac_downloads_7/GDC_import/data/81868de6-a7e2-4065-912e-e60476cdaf03/203561450018_R05C01_Grn.idat 13676216 IDAT NA 81868de6-a7e2-4065-912e-e60476cdaf03 katmai
C3L-03589.MethArray.Red.T C3L-03589 UCEC Methylation Array tumor /diskmnt/Projects/cptac_downloads_7/GDC_import/data/05539ace-57f4-48e9-9992-5e70cb27c15d/203561450018_R05C01_Red.idat 13676216 IDAT NA 05539ace-57f4-48e9-9992-5e70cb27c15d katmai
C3L-03589.miRNA-Seq.T C3L-03589 UCEC miRNA-Seq tumor /diskmnt/Projects/cptac_downloads_7/GDC_import/data/547dd03e-764e-403b-850d-5ffde2ae0db2/190508_UNC31-K00269_0215_BH7FYKBBXY_CAACTA_S29_L004_R1_001.unaln.bam 238475972 BAM NA 547dd03e-764e-403b-850d-5ffde2ae0db2 katmai
Expand Down Expand Up @@ -5815,6 +5817,18 @@ C3L-05386.MethArray.Green.Tpb C3L-05386 AML Methylation Array tumor_peripheral_b
C3L-05386.MethArray.Red.Tpb C3L-05386 AML Methylation Array tumor_peripheral_blood /diskmnt/Projects/cptac_downloads_7/GDC_import/data/38f1717f-f595-4d1c-856f-eaa6532f7622/203561450103_R07C01_Red.idat 13676216 IDAT NA 38f1717f-f595-4d1c-856f-eaa6532f7622 katmai
C3L-05386.miRNA-Seq.Tpb C3L-05386 AML miRNA-Seq tumor_peripheral_blood /diskmnt/Projects/cptac_downloads_6/GDC_import/data/b75c03df-2a12-458c-b3a1-a9fcb07de56e/190828_UNC32-K00270_0200_BH7GVJBBXY_GGTAGC_S160_L008_R1_001.unaln.bam 274447132 BAM NA b75c03df-2a12-458c-b3a1-a9fcb07de56e katmai
C3L-05386.RNA-Seq.genomic.Tpb.hg38 C3L-05386 AML RNA-Seq tumor_peripheral_blood /diskmnt/Projects/cptac/GDC_import/data/f0c69f75-fe64-43d2-af0c-38ef2a1c00b7/fc9ab0f9-f6a3-4cde-8d51-904160e099c5.rna_seq.genomic.gdc_realn.bam 9519519732 BAM hg38 f0c69f75-fe64-43d2-af0c-38ef2a1c00b7 katmai
C3L-07032.RNA-Seq.R1.A C3L-07032 PDA RNA-Seq tissue_normal /diskmnt/Projects/cptac/GDC_import/data/88ba9750-4977-49cb-9058-c68e1b1b7570/200731_UNC31-K00269_0286_AHHWJ2BBXY_AACAGGTT-ATACCAAG_S5_L002_R1_001.fastq.gz 4359507199 FASTQ NA 88ba9750-4977-49cb-9058-c68e1b1b7570 katmai
C3L-07032.RNA-Seq.R2.A C3L-07032 PDA RNA-Seq tissue_normal /diskmnt/Projects/cptac/GDC_import/data/f37f4fc1-e819-471b-8ad1-0bf07194d51f/200731_UNC31-K00269_0286_AHHWJ2BBXY_AACAGGTT-ATACCAAG_S5_L002_R2_001.fastq.gz 4600968470 FASTQ NA f37f4fc1-e819-471b-8ad1-0bf07194d51f katmai
C3L-07033.RNA-Seq.R1.A C3L-07033 PDA RNA-Seq tissue_normal /diskmnt/Projects/cptac/GDC_import/data/37537c02-5de7-4494-ae9e-e4e717f391fb/200731_UNC31-K00269_0286_AHHWJ2BBXY_TGGTGGCA-TCCTGTAA_S7_L002_R1_001.fastq.gz 4531104702 FASTQ NA 37537c02-5de7-4494-ae9e-e4e717f391fb katmai
C3L-07033.RNA-Seq.R2.A C3L-07033 PDA RNA-Seq tissue_normal /diskmnt/Projects/cptac/GDC_import/data/e074f8ea-87fc-499f-b028-738c12b62cbc/200731_UNC31-K00269_0286_AHHWJ2BBXY_TGGTGGCA-TCCTGTAA_S7_L002_R2_001.fastq.gz 5091753246 FASTQ NA e074f8ea-87fc-499f-b028-738c12b62cbc katmai
C3L-07034.RNA-Seq.R1.A C3L-07034 PDA RNA-Seq tissue_normal /diskmnt/Projects/cptac/GDC_import/data/156bec6c-7178-4b00-8d6b-cb5bae408463/200731_UNC31-K00269_0286_AHHWJ2BBXY_AGGCAGAG-AGAATGCC_S1_L001_R1_001.fastq.gz 3190444841 FASTQ NA 156bec6c-7178-4b00-8d6b-cb5bae408463 katmai
C3L-07034.RNA-Seq.R2.A C3L-07034 PDA RNA-Seq tissue_normal /diskmnt/Projects/cptac/GDC_import/data/d9794500-bac2-45f1-a463-d7e90fa594ab/200731_UNC31-K00269_0286_AHHWJ2BBXY_AGGCAGAG-AGAATGCC_S1_L001_R2_001.fastq.gz 3715062124 FASTQ NA d9794500-bac2-45f1-a463-d7e90fa594ab katmai
C3L-07035.RNA-Seq.R1.A C3L-07035 PDA RNA-Seq tissue_normal /diskmnt/Projects/cptac/GDC_import/data/3a11d2c4-3f6d-4d93-9f48-485afc4059bb/200731_UNC31-K00269_0286_AHHWJ2BBXY_GAATGAGA-GAGGCATT_S3_L001_R1_001.fastq.gz 4262833306 FASTQ NA 3a11d2c4-3f6d-4d93-9f48-485afc4059bb katmai
C3L-07035.RNA-Seq.R2.A C3L-07035 PDA RNA-Seq tissue_normal /diskmnt/Projects/cptac/GDC_import/data/697dbb59-0c83-4289-be41-f3804a391a4d/200731_UNC31-K00269_0286_AHHWJ2BBXY_GAATGAGA-GAGGCATT_S3_L001_R2_001.fastq.gz 4815441455 FASTQ NA 697dbb59-0c83-4289-be41-f3804a391a4d katmai
C3L-07036.RNA-Seq.R1.A C3L-07036 PDA RNA-Seq tissue_normal /diskmnt/Projects/cptac/GDC_import/data/f9245412-081c-4289-99fb-475fac2473ee/200731_UNC31-K00269_0286_AHHWJ2BBXY_TGCGGCGT-CCTCGGTA_S4_L001_R1_001.fastq.gz 2990375045 FASTQ NA f9245412-081c-4289-99fb-475fac2473ee katmai
C3L-07036.RNA-Seq.R2.A C3L-07036 PDA RNA-Seq tissue_normal /diskmnt/Projects/cptac/GDC_import/data/55668996-4f4e-4508-9152-634da507607d/200731_UNC31-K00269_0286_AHHWJ2BBXY_TGCGGCGT-CCTCGGTA_S4_L001_R2_001.fastq.gz 3441842587 FASTQ NA 55668996-4f4e-4508-9152-634da507607d katmai
C3L-07037.RNA-Seq.R1.A C3L-07037 PDA RNA-Seq tissue_normal /diskmnt/Projects/cptac/GDC_import/data/3399328b-16f5-4c7a-8e1f-338368645ed8/200731_UNC31-K00269_0286_AHHWJ2BBXY_CATAATAC-TTCTAACG_S2_L001_R1_001.fastq.gz 4194791505 FASTQ NA 3399328b-16f5-4c7a-8e1f-338368645ed8 katmai
C3L-07037.RNA-Seq.R2.A C3L-07037 PDA RNA-Seq tissue_normal /diskmnt/Projects/cptac/GDC_import/data/db70a6b8-672d-4a13-bd16-bd52d87843fe/200731_UNC31-K00269_0286_AHHWJ2BBXY_CATAATAC-TTCTAACG_S2_L001_R2_001.fastq.gz 4651885575 FASTQ NA db70a6b8-672d-4a13-bd16-bd52d87843fe katmai
C3N-00148.MethArray.Green.T C3N-00148 CCRCC Methylation Array tumor /diskmnt/Projects/cptac_downloads_7/GDC_import/data/3fa87ccb-2393-4f48-957e-812d6cad2eae/202184900104_R08C01_Grn.idat 13676256 IDAT NA 3fa87ccb-2393-4f48-957e-812d6cad2eae katmai
C3N-00148.MethArray.Red.T C3N-00148 CCRCC Methylation Array tumor /diskmnt/Projects/cptac_downloads_7/GDC_import/data/42e7346d-ce99-406c-bef4-2fa6bc79f095/202184900104_R08C01_Red.idat 13676256 IDAT NA 42e7346d-ce99-406c-bef4-2fa6bc79f095 katmai
C3N-00148.miRNA-Seq.A C3N-00148 CCRCC miRNA-Seq tissue_normal /diskmnt/Projects/cptac_downloads_7/GDC_import/data/5df9e78b-e37d-4284-9eed-64a9a6166eeb/181108_UNC31-K00269_0163_BH23TVBBXY_ATGAGC_S26_L002_R1_001.unaln.bam 189924824 BAM NA 5df9e78b-e37d-4284-9eed-64a9a6166eeb katmai
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