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Results of discovery run 20210928
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* Workdir: katmai:/diskmnt/Projects/cptac_scratch/CPTAC3.workflow/discover/discover.20210928
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@mwyczalkowski
mwyczalkowski committed Sep 29, 2021
1 parent 7bcc6ca commit a9d6789
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4 changes: 2 additions & 2 deletions CPTAC3.Catalog.Summary.dat
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Expand Up @@ -3867,11 +3867,11 @@ C3N-03442 LUAD WGS.hg19 WXS.hg19 RNA.fq miRNA.fq
C3N-03443 LSCC WGS.hg19 WXS.hg19 RNA.fq miRNA.fq WGS.hg38 WXS.hg38 RNA.hg38 miRNA.hg38 MethArray
C3N-03444 LSCC WGS.hg19 WXS.hg19 RNA.fq miRNA.fq WGS.hg38 WXS.hg38 RNA.hg38 miRNA.hg38 MethArray
C3N-03445 LUAD WGS.hg19 WXS.hg19 RNA.fq miRNA.fq WGS.hg38 WXS.hg38 RNA.hg38 miRNA.hg38 MethArray
C3N-03446 GBM WGS.hg19 WXS.hg19 RNA.fq AA miRNA.fq A WGS.hg38 WXS.hg38 RNA.hg38 miRNA.hg38 MethArray AA
C3N-03446 GBM WGS.hg19 WXS.hg19 A RNA.fq AA miRNA.fq A WGS.hg38 WXS.hg38 RNA.hg38 miRNA.hg38 MethArray AA
C3N-03447 TBD WGS.hg19 WXS.hg19 RNA.fq miRNA.fq WGS.hg38 WXS.hg38 RNA.hg38 miRNA.hg38 MethArray
C3N-03448 GBM WGS.hg19 T N WXS.hg19 T N RNA.fq TT miRNA.fq T WGS.hg38 T N WXS.hg38 T N RNA.hg38 TTT miRNA.hg38 T MethArray TT
C3N-03449 GBM WGS.hg19 T N WXS.hg19 T N RNA.fq TT miRNA.fq T WGS.hg38 T N WXS.hg38 T N RNA.hg38 TTT miRNA.hg38 T MethArray TT
C3N-03450 GBM WGS.hg19 WXS.hg19 RNA.fq AA miRNA.fq A WGS.hg38 WXS.hg38 RNA.hg38 miRNA.hg38 MethArray AA
C3N-03450 GBM WGS.hg19 WXS.hg19 A RNA.fq AA miRNA.fq A WGS.hg38 WXS.hg38 RNA.hg38 miRNA.hg38 MethArray AA
C3N-03451 GBM WGS.hg19 WXS.hg19 RNA.fq miRNA.fq WGS.hg38 WXS.hg38 RNA.hg38 miRNA.hg38 MethArray
C3N-03452 GBM WGS.hg19 T N WXS.hg19 T N A RNA.fq TT AA miRNA.fq T A WGS.hg38 T N WXS.hg38 T N RNA.hg38 TTT miRNA.hg38 T MethArray TT
C3N-03453 GBM WGS.hg19 T N WXS.hg19 T N RNA.fq TT miRNA.fq T WGS.hg38 T N WXS.hg38 T N RNA.hg38 TTT miRNA.hg38 T MethArray TT
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2 changes: 2 additions & 0 deletions CPTAC3.Catalog.dat
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Expand Up @@ -34106,6 +34106,7 @@ C3N-03446.MethArray.Red.A C3N-03446 GBM Methylation Array tissue_normal CPT04048
C3N-03446.miRNA-Seq.A C3N-03446 GBM miRNA-Seq tissue_normal CPT0404840017 210702_UNC32-K00270_0289_AHKJ22BBXY_TATAAT_S36_L005_R1_001.unaln.bam 316093048 BAM NA 26c61e95-8e69-4aac-8093-f950400fac1e 3ce29dce686d5d5a92493516b4475564 NA Solid Tissue Normal C3N-03446-02
C3N-03446.RNA-Seq.R1.A C3N-03446 GBM RNA-Seq tissue_normal CPT0404840017 210708_UNC32-K00270_0290_BHLLHHBBXY_GGTCACGA-GTATTATG_S15_L004_R1_001.fastq.gz 3964234824 FASTQ NA 5a9e30f7-2202-4950-a643-61f2b2a1579d d80f04a2683316e2659b06508edc4196 NA Solid Tissue Normal C3N-03446-02
C3N-03446.RNA-Seq.R2.A C3N-03446 GBM RNA-Seq tissue_normal CPT0404840017 210708_UNC32-K00270_0290_BHLLHHBBXY_GGTCACGA-GTATTATG_S15_L004_R2_001.fastq.gz 4086584855 FASTQ NA 2c66f195-9484-4900-9338-d02c9392ee59 bd04445d03281a0ef5a319f077c4fc8a NA Solid Tissue Normal C3N-03446-02
C3N-03446.WXS.A C3N-03446 GBM WXS tissue_normal CPT0404840014 CPT0404840014.WholeExome.RP-1303.bam 22291412082 BAM NA faf88db0-b0df-4b2b-9dfa-4bcd0b1ba7af 96990bbca730a0929138c7ebf0f03f09 hg19 Solid Tissue Normal C3N-03446-02
C3N-03448.MethArray.Green.T C3N-03448 GBM Methylation Array tumor CPT0225870006 204372030127_R02C01_Grn.idat 13677880 IDAT Green 0695eb5d-f8ff-4fa1-88ea-e2b4348583f1 8748ce07993cb7e7e05e622a8502101a NA Primary Tumor C3N-03448-01
C3N-03448.MethArray.Red.T C3N-03448 GBM Methylation Array tumor CPT0225870006 204372030127_R02C01_Red.idat 13677880 IDAT Red 58b8baf0-e2d0-4d78-b683-175aa024940f ce8441014e6623091a86ab6082bf0661 NA Primary Tumor C3N-03448-01
C3N-03448.miRNA-Seq.T C3N-03448 GBM miRNA-Seq tumor CPT0225870013 200513_UNC31-K00269_0278_BHH7Y7BBXY_CATTTT_S35_L008_R1_001.unaln.bam 301304798 BAM NA ed576d30-32bf-49ac-8c9e-578a83e34954 0248c4f80b6d477a2c8a02d234b212b9 NA Primary Tumor C3N-03448-01
Expand Down Expand Up @@ -34145,6 +34146,7 @@ C3N-03450.MethArray.Red.A C3N-03450 GBM Methylation Array tissue_normal CPT04050
C3N-03450.miRNA-Seq.A C3N-03450 GBM miRNA-Seq tissue_normal CPT0405020011 210702_UNC32-K00270_0289_AHKJ22BBXY_TCCCGA_S38_L005_R1_001.unaln.bam 256334598 BAM NA d2b8b521-7e0c-42d6-a8e2-c43bdd7d1c56 69691bed2249a38919ca3a963cfebd41 NA Solid Tissue Normal C3N-03450-08
C3N-03450.RNA-Seq.R1.A C3N-03450 GBM RNA-Seq tissue_normal CPT0405020011 210708_UNC32-K00270_0290_BHLLHHBBXY_TCATCCTT-AGCGAGCT_S16_L004_R1_001.fastq.gz 3924132801 FASTQ NA 81a63cde-b0d0-40d8-bd21-4ac99c45f504 2d11f9f036bddf4e4561edcc4a4ece93 NA Solid Tissue Normal C3N-03450-08
C3N-03450.RNA-Seq.R2.A C3N-03450 GBM RNA-Seq tissue_normal CPT0405020011 210708_UNC32-K00270_0290_BHLLHHBBXY_TCATCCTT-AGCGAGCT_S16_L004_R2_001.fastq.gz 4014228979 FASTQ NA d26762d9-9ed0-4411-85a1-8a6ecfa904a0 99f90c343e5a58fbfdffe3b13f207ab5 NA Solid Tissue Normal C3N-03450-08
C3N-03450.WXS.A C3N-03450 GBM WXS tissue_normal CPT0405020008 CPT0405020008.WholeExome.RP-1303.bam 22154672056 BAM NA 7498e01b-ef12-4dee-99a0-ab79f64e0119 1f933140b7b02d898638a8279e35d057 hg19 Solid Tissue Normal C3N-03450-08
C3N-03452.MethArray.Green.T C3N-03452 GBM Methylation Array tumor CPT0225960006 204372030076_R02C01_Grn.idat 13677890 IDAT Green bc8ab5ba-51f4-4ff2-9616-8708f899897e 3b21f01780991f8a065b8b6b2eee2574 NA Primary Tumor C3N-03452-01
C3N-03452.MethArray.Red.T C3N-03452 GBM Methylation Array tumor CPT0225960006 204372030076_R02C01_Red.idat 13677890 IDAT Red 8e4a41b8-214c-475b-b807-329b14932312 cedfee86c5e2ea8066655cbd30a67eba NA Primary Tumor C3N-03452-01
C3N-03452.miRNA-Seq.A C3N-03452 GBM miRNA-Seq tissue_normal CPT0405170011 210702_UNC32-K00270_0289_AHKJ22BBXY_TCGAAG_S39_L005_R1_001.unaln.bam 419837604 BAM NA 1397533b-5753-41d0-b907-ae1a3166f07e 3fc014cf0f0afbd510c37c1280e20b3c NA Solid Tissue Normal C3N-03452-05
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