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Results of WXS Germline analysis of 7 AML cases
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* Upload dir: /gscuser/mwyczalk/projects/CPTAC3/submit.Y3/20230103.WXS_Germline.batch_final
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Matthew Wyczalkowski committed Jan 3, 2023
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7 changes: 7 additions & 0 deletions DCC_Analysis_Summary/WXS_Germline.DCC_analysis_summary.dat
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Expand Up @@ -1169,6 +1169,7 @@ C3L-06356 AML WXS_Germline v1.1 20220920 Y3 /CPTAC3.Y3_WashU/AML/CPTAC3_AML_WXS_
C3L-06357 AML WXS_Germline v1.1 20220920 Y3 /CPTAC3.Y3_WashU/AML/CPTAC3_AML_WXS_Germline_v1.1_WXS_Germline.batch_822_20220920/C3L-06357.filtered.AD.5.noLongIndels.vcf.gz 3680170 VCF 8de14e07a59c304f63035bb7aca0f6ae C3L-06357.WXS.Nbc.hg38 27df62fa-1212-431d-8211-9981886b123d
C3L-06361 AML WXS_Germline v1.1 20220920 Y3 /CPTAC3.Y3_WashU/AML/CPTAC3_AML_WXS_Germline_v1.1_WXS_Germline.batch_822_20220920/C3L-06361.filtered.AD.5.noLongIndels.vcf.gz 3825969 VCF 4329f3555ef7b8a41251569dfcf12082 C3L-06361.WXS.Nbc.hg38 da2e2061-120f-44eb-90c4-e49d0abe0df4
C3L-06364 AML WXS_Germline v1.1 20220920 Y3 /CPTAC3.Y3_WashU/AML/CPTAC3_AML_WXS_Germline_v1.1_WXS_Germline.batch_822_20220920/C3L-06364.filtered.AD.5.noLongIndels.vcf.gz 3377428 VCF 3631eb94e22044c0a14d84ef548e43e4 C3L-06364.WXS.Nbc.hg38 781cad08-5f3f-483a-b56a-0415097dd98e
C3L-06368 AML WXS_Germline v1.1 20230103 Y3 /CPTAC3.Y3_WashU/AML/CPTAC3_AML_WXS_Germline_v1.1_batch_final_20230103/C3L-06368.filtered.AD.5.noLongIndels.vcf.gz 3720160 VCF a9e19711651e524f765e65c9cd2909e5 C3L-06368.WXS.Nbc.hg38 431be984-ae6d-416d-9841-1b56a4ceeb6f
C3L-06369 AML WXS_Germline v1.1 20220920 Y3 /CPTAC3.Y3_WashU/AML/CPTAC3_AML_WXS_Germline_v1.1_WXS_Germline.batch_822_20220920/C3L-06369.filtered.AD.5.noLongIndels.vcf.gz 7257635 VCF bf9e3099fd9c1472c41589d078d79977 C3L-06369.WXS.Nbc.hg38 cfec7a25-deba-47ba-baa1-a98913007129
C3L-06374 AML WXS_Germline v1.1 20220920 Y3 /CPTAC3.Y3_WashU/AML/CPTAC3_AML_WXS_Germline_v1.1_WXS_Germline.batch_822_20220920/C3L-06374.filtered.AD.5.noLongIndels.vcf.gz 3541964 VCF c478ec698c8e4a71b85dcfbdc7b453c3 C3L-06374.WXS.Nbc.hg38 91de498d-bc4c-4448-a7ec-eda0c295ee08
C3L-06386 AML WXS_Germline v1.1 20220920 Y3 /CPTAC3.Y3_WashU/AML/CPTAC3_AML_WXS_Germline_v1.1_WXS_Germline.batch_822_20220920/C3L-06386.filtered.AD.5.noLongIndels.vcf.gz 3980940 VCF e98447770c342bd4421deed71916b6c8 C3L-06386.WXS.Nbc.hg38 27966373-38a4-4697-8eda-28539d19e5c6
Expand Down Expand Up @@ -1196,10 +1197,16 @@ C3L-06983 AML WXS_Germline v1.1 20220920 Y3 /CPTAC3.Y3_WashU/AML/CPTAC3_AML_WXS_
C3L-06984 AML WXS_Germline v1.1 20220920 Y3 /CPTAC3.Y3_WashU/AML/CPTAC3_AML_WXS_Germline_v1.1_WXS_Germline.batch_822_20220920/C3L-06984.filtered.AD.5.noLongIndels.vcf.gz 2964719 VCF dd8acb842d1b937df39a9f85d017521d C3L-06984.WXS.Nbc.hg38 7810bf2c-1091-45bc-b9e5-9814def4ef7f
C3L-07012 AML WXS_Germline v1.1 20220920 Y3 /CPTAC3.Y3_WashU/AML/CPTAC3_AML_WXS_Germline_v1.1_WXS_Germline.batch_822_20220920/C3L-07012.filtered.AD.5.noLongIndels.vcf.gz 3692911 VCF 6fac3185880a515fc475ed9227bd2161 C3L-07012.WXS.Nbc.hg38 64e2bdb1-f10f-420d-a03e-60e7d01af376
C3L-07013 AML WXS_Germline v1.1 20220920 Y3 /CPTAC3.Y3_WashU/AML/CPTAC3_AML_WXS_Germline_v1.1_WXS_Germline.batch_822_20220920/C3L-07013.filtered.AD.5.noLongIndels.vcf.gz 4030016 VCF e3131abfb04b1ab5b740c64963a80741 C3L-07013.WXS.Nbc.hg38 6d83953f-9d59-45fd-9f1c-48d917f0efe9
C3L-07019 AML WXS_Germline v1.1 20230103 Y3 /CPTAC3.Y3_WashU/AML/CPTAC3_AML_WXS_Germline_v1.1_batch_final_20230103/C3L-07019.filtered.AD.5.noLongIndels.vcf.gz 4254877 VCF a48d622864cdde66a538ee4c675750c5 C3L-07019.WXS.Nbc.hg38 fd859c96-110c-404f-b830-598ebb95a224
C3L-07202 GBM WXS_Germline v1.1 20220920 Y3 /CPTAC3.Y3_WashU/GBM/CPTAC3_GBM_WXS_Germline_v1.1_WXS_Germline.batch_822_20220920/C3L-07202.filtered.AD.5.noLongIndels.vcf.gz 4157042 VCF 8bb6a6eb806c640d80f725acbf5f6354 C3L-07202.WXS.N.hg38 5d21eff9-b0d4-40dd-ad5d-fd6387a07eed
C3L-07213 GBM WXS_Germline v1.1 20220920 Y3 /CPTAC3.Y3_WashU/GBM/CPTAC3_GBM_WXS_Germline_v1.1_WXS_Germline.batch_822_20220920/C3L-07213.filtered.AD.5.noLongIndels.vcf.gz 4021546 VCF 5a6fe911cf63993a7b3001bfc5d6e035 C3L-07213.WXS.N.hg38 51e744f3-1253-44bf-9b98-c26271785d96
C3L-07437 AML WXS_Germline v1.1 20220920 Y3 /CPTAC3.Y3_WashU/AML/CPTAC3_AML_WXS_Germline_v1.1_WXS_Germline.batch_822_20220920/C3L-07437.filtered.AD.5.noLongIndels.vcf.gz 3637569 VCF a7b41ac228a0fec70aa7ff3867a72884 C3L-07437.WXS.Nbc.hg38 2d79233e-307d-4835-b070-47feba860d01
C3L-07438 AML WXS_Germline v1.1 20230103 Y3 /CPTAC3.Y3_WashU/AML/CPTAC3_AML_WXS_Germline_v1.1_batch_final_20230103/C3L-07438.filtered.AD.5.noLongIndels.vcf.gz 3785523 VCF 2f55b7414ccec7295dac0640a58da023 C3L-07438.WXS.Nbc.hg38 bc7cc37e-99f4-496c-bf75-933da02323a5
C3L-07439 AML WXS_Germline v1.1 20220920 Y3 /CPTAC3.Y3_WashU/AML/CPTAC3_AML_WXS_Germline_v1.1_WXS_Germline.batch_822_20220920/C3L-07439.filtered.AD.5.noLongIndels.vcf.gz 3606084 VCF e4ff0d1c5060ef3cda8efb3ac8c6dbad C3L-07439.WXS.Nbc.hg38 eed05d67-1bf7-436f-bfdb-b07dd6beb964
C3L-07488 AML WXS_Germline v1.1 20230103 Y3 /CPTAC3.Y3_WashU/AML/CPTAC3_AML_WXS_Germline_v1.1_batch_final_20230103/C3L-07488.filtered.AD.5.noLongIndels.vcf.gz 3578034 VCF 512b77e680a7ec3ccb839f4772312794 C3L-07488.WXS.Nbc.hg38 e8feacbe-f33f-4a81-a083-7f8943ab8acd
C3L-07571 AML WXS_Germline v1.1 20230103 Y3 /CPTAC3.Y3_WashU/AML/CPTAC3_AML_WXS_Germline_v1.1_batch_final_20230103/C3L-07571.filtered.AD.5.noLongIndels.vcf.gz 4864213 VCF ed34699586acccfe32c4723d9146cf5e C3L-07571.WXS.Nbc.hg38 047efbf7-3f30-4e72-8121-f1b6d24124a4
C3L-07580 AML WXS_Germline v1.1 20230103 Y3 /CPTAC3.Y3_WashU/AML/CPTAC3_AML_WXS_Germline_v1.1_batch_final_20230103/C3L-07580.filtered.AD.5.noLongIndels.vcf.gz 4358368 VCF 58475159d651425d97b714018ab1ac00 C3L-07580.WXS.Nbc.hg38 cabb81e0-06ee-4b8e-8825-3255bf40595f
C3L-07588 AML WXS_Germline v1.1 20230103 Y3 /CPTAC3.Y3_WashU/AML/CPTAC3_AML_WXS_Germline_v1.1_batch_final_20230103/C3L-07588.filtered.AD.5.noLongIndels.vcf.gz 3876586 VCF 25f0a5760b21d1e5c41a8bb69fd51c3f C3L-07588.WXS.Nbc.hg38 7de34f0d-b4f8-4a3c-a39f-a24318894ff0
C3L-07611 GBM WXS_Germline v1.1 20220920 Y3 /CPTAC3.Y3_WashU/GBM/CPTAC3_GBM_WXS_Germline_v1.1_WXS_Germline.batch_822_20220920/C3L-07611.filtered.AD.5.noLongIndels.vcf.gz 4240695 VCF 44423d95740f385fc8f9414b15654ea0 C3L-07611.WXS.N.hg38 49d7c1cf-db69-41a6-9cbb-88f382ced875
C3N-00148 CCRCC WXS_Germline v1.1 20201209 Y3 /CPTAC3.Y3_WashU/CCRCC/CPTAC3_CCRCC_WXS_Germline_v1.1_Germline_WXS.779_20201209/C3N-00148.filtered.ROI.AD.5.INDELS.NS.vcf.gz 677727 VCF 08f2c606168d413c3f95125eb3de8879 C3N-00148.WXS.N.hg38 06dcff89-4b72-4e25-ac00-9f8ad4f4a30c
C3N-00148 CCRCC WXS_Germline v1.1b 20210127 Y3 /CPTAC3.Y3_WashU/CCRCC/CPTAC3_CCRCC_WXS_Germline_v1.1b_WXS_779.v1.1b_20210127/C3N-00148.filtered.AD.5.noLongINDELS.vcf.gz 7423746 VCF b32a4e33e8f3907d45431925085a987b C3N-00148.WXS.N.hg38 06dcff89-4b72-4e25-ac00-9f8ad4f4a30c
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