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Submission of RNA-Seq_Transcript batch AML_batch_11262022
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mwyczalkowski committed Jan 3, 2023
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Expand Up @@ -1190,6 +1190,7 @@ C3L-06357 AML RNA-Seq_Transcript v1.2 20220419 Y3 /CPTAC3.Y3_WashU/AML/CPTAC3_AM
C3L-06361 AML RNA-Seq_Transcript v1.2 20220419 Y3 /CPTAC3.Y3_WashU/AML/CPTAC3_AML_RNA-Seq_Transcript_v1.2_AML_Transcript_20220419/C3L-06361.gtf.transcripts.gtf.gz 17247503 gtf 126354beac5f2e6efe941cd554fe4c10 tumor_bone_marrow C3L-06361.RNA-Seq.R1.Tbm 22f88357-a1a0-4130-9373-ede06a3ee0d8 C3L-06361.RNA-Seq.R2.Tbm 44c74e6a-9e07-4895-9db3-443802ec3baa
C3L-06364 AML RNA-Seq_Transcript v1.2 20220419 Y3 /CPTAC3.Y3_WashU/AML/CPTAC3_AML_RNA-Seq_Transcript_v1.2_AML_Transcript_20220419/C3L-06364.gtf.transcripts.gtf.gz 16705060 gtf 190cf6abac3aeae84910df0af64dfeeb tumor_bone_marrow C3L-06364.RNA-Seq.R1.Tbm 8d2c68f5-5586-4a61-8ade-0ab1e8ed4aee C3L-06364.RNA-Seq.R2.Tbm bae466cc-d600-4db8-a4bb-915e6fac032f
C3L-06367 AML RNA-Seq_Transcript v1.2 20220419 Y3 /CPTAC3.Y3_WashU/AML/CPTAC3_AML_RNA-Seq_Transcript_v1.2_AML_Transcript_20220419/C3L-06367.gtf.transcripts.gtf.gz 18486932 gtf 2be12e08fd7d089e9b3ff6f836cb5eaa tumor_bone_marrow C3L-06367.RNA-Seq.R1.Tbm 9fb2e454-11e7-44fd-97a5-abd68cc50890 C3L-06367.RNA-Seq.R2.Tbm 9ff587b2-7250-4cae-b7f7-6be208c9ae33
C3L-06368 AML RNA-Seq_Transcript v1.5 20230103 Y3 /CPTAC3.Y3_WashU/AML/CPTAC3_AML_RNA-Seq_Transcript_v1.5_AML_batch_11262022_20230103/C3L-06368.T.gtf.transcripts.gtf.gz 17865715 gtf d49c0a08f968b0fe161a003a598094e2 tumor_bone_marrow C3L-06368.RNA-Seq.S20_L005_R1.Tbm 8d70e8fc-2f6a-4da7-8a13-3cb09163563d C3L-06368.RNA-Seq.S20_L005_R1.Tbm 8d70e8fc-2f6a-4da7-8a13-3cb09163563d
C3L-06369 AML RNA-Seq_Transcript v1.2 20220419 Y3 /CPTAC3.Y3_WashU/AML/CPTAC3_AML_RNA-Seq_Transcript_v1.2_AML_Transcript_20220419/C3L-06369.gtf.transcripts.gtf.gz 18218234 gtf ff480fd5bd4e9a23a9823a43a484f22d tumor_bone_marrow C3L-06369.RNA-Seq.R1.Tbm 8912632e-66df-420c-9db6-8a5138fffedd C3L-06369.RNA-Seq.R2.Tbm 0d4ca071-c2ec-480b-ac31-4f78236b2d52
C3L-06374 AML RNA-Seq_Transcript v1.2 20220419 Y3 /CPTAC3.Y3_WashU/AML/CPTAC3_AML_RNA-Seq_Transcript_v1.2_AML_Transcript_20220419/C3L-06374.gtf.transcripts.gtf.gz 19550362 gtf a53d350269cb4f958c37cbbe8e1085ff tumor_bone_marrow C3L-06374.RNA-Seq.R1.Tbm 23a53be6-2568-49b6-9e77-cb0f8b763b6f C3L-06374.RNA-Seq.R2.Tbm 210f1b92-20ce-4c76-b450-9070622728bd
C3L-06386 AML RNA-Seq_Transcript v1.2 20220419 Y3 /CPTAC3.Y3_WashU/AML/CPTAC3_AML_RNA-Seq_Transcript_v1.2_AML_Transcript_20220419/C3L-06386.gtf.transcripts.gtf.gz 17547103 gtf 4d1198178711440e9bb5b0dddd112664 tumor_peripheral_blood C3L-06386.RNA-Seq.R1.Tpb 455d60e4-3183-4728-a235-10f3a9e8adf1 C3L-06386.RNA-Seq.R2.Tpb 6934ddbf-b5e2-4486-8c78-acc7e79ad220
Expand Down Expand Up @@ -1220,6 +1221,7 @@ C3L-06983 AML RNA-Seq_Transcript v1.2 20220419 Y3 /CPTAC3.Y3_WashU/AML/CPTAC3_AM
C3L-06984 AML RNA-Seq_Transcript v1.2 20220419 Y3 /CPTAC3.Y3_WashU/AML/CPTAC3_AML_RNA-Seq_Transcript_v1.2_AML_Transcript_20220419/C3L-06984.gtf.transcripts.gtf.gz 17065862 gtf 42ff64e9e75fd43bb4afdcf7a8e6b07d tumor_peripheral_blood C3L-06984.RNA-Seq.R1.Tpb c9020348-4ac7-45b2-8b26-0f3600eea6be C3L-06984.RNA-Seq.R2.Tpb d80c3794-a9dc-4b1b-8acc-12c57ffbe287
C3L-07012 AML RNA-Seq_Transcript v1.2 20220419 Y3 /CPTAC3.Y3_WashU/AML/CPTAC3_AML_RNA-Seq_Transcript_v1.2_AML_Transcript_20220419/C3L-07012.gtf.transcripts.gtf.gz 16796700 gtf 094c057e5dbb169bae6dd8b9213b3935 tumor_bone_marrow C3L-07012.RNA-Seq.R1.Tbm bed0b6b6-1024-4b88-9ccd-f4702700ff3f C3L-07012.RNA-Seq.R2.Tbm 7b57f8ce-1e4c-4f0d-9d81-370bb7a90774
C3L-07013 AML RNA-Seq_Transcript v1.2 20220419 Y3 /CPTAC3.Y3_WashU/AML/CPTAC3_AML_RNA-Seq_Transcript_v1.2_AML_Transcript_20220419/C3L-07013.gtf.transcripts.gtf.gz 16378736 gtf 3822548de2a2add018eebec51b36206e tumor_bone_marrow C3L-07013.RNA-Seq.R1.Tbm 17aeb355-fa4f-4ff5-9fd5-8d0e21aff2d3 C3L-07013.RNA-Seq.R2.Tbm 1023c6f2-892a-4949-82ec-e92440e8f394
C3L-07019 AML RNA-Seq_Transcript v1.5 20230103 Y3 /CPTAC3.Y3_WashU/AML/CPTAC3_AML_RNA-Seq_Transcript_v1.5_AML_batch_11262022_20230103/C3L-07019.T.gtf.transcripts.gtf.gz 17139128 gtf 8b7856233c7a4b997868e8695973a2a0 tumor_bone_marrow C3L-07019.RNA-Seq.S6_L002_R1.Tbm f5b8d86a-0576-45f8-8a3c-d1924b5017bf C3L-07019.RNA-Seq.S6_L002_R1.Tbm f5b8d86a-0576-45f8-8a3c-d1924b5017bf
C3L-07032 PDA RNA-Seq_Transcript v1.4 20211028 Y3 /CPTAC3.Y3_WashU/PDA/CPTAC3_PDA_RNA-Seq_Transcript_v1.4_batch_1021_20211028/C3L-07032.tissue_normal.transcripts.gtf.gz 19436545 gtf 3d8f58c8ac1adade0d981cfd8ca17419 tissue_normal C3L-07032.RNA-Seq.R1.A 88ba9750-4977-49cb-9058-c68e1b1b7570 C3L-07032.RNA-Seq.R2.A f37f4fc1-e819-471b-8ad1-0bf07194d51f
C3L-07033 PDA RNA-Seq_Transcript v1.4 20211028 Y3 /CPTAC3.Y3_WashU/PDA/CPTAC3_PDA_RNA-Seq_Transcript_v1.4_batch_1021_20211028/C3L-07033.tissue_normal.transcripts.gtf.gz 19980912 gtf 10084f84cb1f956f5c7b2d448aa3fbb3 tissue_normal C3L-07033.RNA-Seq.R1.A 37537c02-5de7-4494-ae9e-e4e717f391fb C3L-07033.RNA-Seq.R2.A e074f8ea-87fc-499f-b028-738c12b62cbc
C3L-07034 PDA RNA-Seq_Transcript v1.4 20211028 Y3 /CPTAC3.Y3_WashU/PDA/CPTAC3_PDA_RNA-Seq_Transcript_v1.4_batch_1021_20211028/C3L-07034.tissue_normal.transcripts.gtf.gz 17252737 gtf f4eebd18e4dbe5da7cbdcb226ee63be0 tissue_normal C3L-07034.RNA-Seq.R1.A 156bec6c-7178-4b00-8d6b-cb5bae408463 C3L-07034.RNA-Seq.R2.A d9794500-bac2-45f1-a463-d7e90fa594ab
Expand All @@ -1229,8 +1231,13 @@ C3L-07037 PDA RNA-Seq_Transcript v1.4 20211028 Y3 /CPTAC3.Y3_WashU/PDA/CPTAC3_PD
C3L-07202 GBM RNA-Seq_Transcript v1.4 20211028 Y3 /CPTAC3.Y3_WashU/GBM/CPTAC3_GBM_RNA-Seq_Transcript_v1.4_batch_1021_20211028/C3L-07202.tumor.transcripts.gtf.gz 20366035 gtf 1eccd5965f1a02baa02f4bde9a39934d tumor C3L-07202.RNA-Seq.R1.T 0d2a4b38-4741-48ac-bd06-58e5a7397594 C3L-07202.RNA-Seq.R2.T 9e0f8f05-b887-4c26-b196-f8d137d04b38
C3L-07213 GBM RNA-Seq_Transcript v1.4 20211028 Y3 /CPTAC3.Y3_WashU/GBM/CPTAC3_GBM_RNA-Seq_Transcript_v1.4_batch_1021_20211028/C3L-07213.tumor.transcripts.gtf.gz 20470790 gtf 2974d317dc5ab11fd5ff73e93697636d tumor C3L-07213.RNA-Seq.R1.T a3414943-3507-49d3-8c9f-c50c7721b209 C3L-07213.RNA-Seq.R2.T ea6ad82f-b787-4ee4-820c-f4b30dd9d61c
C3L-07437 AML RNA-Seq_Transcript v1.2 20220419 Y3 /CPTAC3.Y3_WashU/AML/CPTAC3_AML_RNA-Seq_Transcript_v1.2_AML_Transcript_20220419/C3L-07437.gtf.transcripts.gtf.gz 16455737 gtf 7165c91753c1da00d9641d057e8c1b93 tumor_peripheral_blood C3L-07437.RNA-Seq.R1.Tpb 19f81621-5e25-4547-9d95-f56513c37ea3 C3L-07437.RNA-Seq.R2.Tpb 37df23e8-805f-4e27-85cd-dc39f8570266
C3L-07438 AML RNA-Seq_Transcript v1.5 20230103 Y3 /CPTAC3.Y3_WashU/AML/CPTAC3_AML_RNA-Seq_Transcript_v1.5_AML_batch_11262022_20230103/C3L-07438.T.gtf.transcripts.gtf.gz 15484650 gtf 414f8597b670f6636752dd13af60ae28 tumor_bone_marrow C3L-07438.RNA-Seq.S12_L003_R1.Tbm dd4aae1f-4c30-43f4-89f5-904cefbc62b8 C3L-07438.RNA-Seq.S12_L003_R1.Tbm dd4aae1f-4c30-43f4-89f5-904cefbc62b8
C3L-07439 AML RNA-Seq_Transcript v1.2 20220419 Y3 /CPTAC3.Y3_WashU/AML/CPTAC3_AML_RNA-Seq_Transcript_v1.2_AML_Transcript_20220419/C3L-07439.gtf.transcripts.gtf.gz 16755645 gtf 769978a776552fa9926b8f55123958a6 tumor_peripheral_blood C3L-07439.RNA-Seq.R1.Tpb 8506fcf0-4ced-4a2a-90ed-878fa8d0f751 C3L-07439.RNA-Seq.R2.Tpb 691147a6-204e-4cfc-acf0-16b432c7ed3d
C3L-07488 AML RNA-Seq_Transcript v1.5 20230103 Y3 /CPTAC3.Y3_WashU/AML/CPTAC3_AML_RNA-Seq_Transcript_v1.5_AML_batch_11262022_20230103/C3L-07488.T.gtf.transcripts.gtf.gz 17133869 gtf 7fed8f7c2fc6cac2afd6d5cd0c2a7eef tumor_bone_marrow C3L-07488.RNA-Seq.S9_L003_R1.Tbm e86414bc-3288-40f9-a858-010e2ff7ef05 C3L-07488.RNA-Seq.S9_L003_R1.Tbm e86414bc-3288-40f9-a858-010e2ff7ef05
C3L-07490 AML RNA-Seq_Transcript v1.2 20220419 Y3 /CPTAC3.Y3_WashU/AML/CPTAC3_AML_RNA-Seq_Transcript_v1.2_AML_Transcript_20220419/C3L-07490.gtf.transcripts.gtf.gz 18472978 gtf 2f429f2da22dc7b234fb21b521e4d6e0 tumor_bone_marrow C3L-07490.RNA-Seq.R1.Tbm 2ebf6805-a5c8-43d5-8fee-730861c13580 C3L-07490.RNA-Seq.R2.Tbm 3215eaf9-a581-4e1b-b71b-3c96b7876cba
C3L-07571 AML RNA-Seq_Transcript v1.5 20230103 Y3 /CPTAC3.Y3_WashU/AML/CPTAC3_AML_RNA-Seq_Transcript_v1.5_AML_batch_11262022_20230103/C3L-07571.T.gtf.transcripts.gtf.gz 16821677 gtf 5c9a006c90e44e48b3c5632437b86028 tumor_bone_marrow C3L-07571.RNA-Seq.S10_L003_R1.Tbm 7940dd9a-50c5-42ef-8e5c-e16f364f7873 C3L-07571.RNA-Seq.S10_L003_R1.Tbm 7940dd9a-50c5-42ef-8e5c-e16f364f7873
C3L-07580 AML RNA-Seq_Transcript v1.5 20230103 Y3 /CPTAC3.Y3_WashU/AML/CPTAC3_AML_RNA-Seq_Transcript_v1.5_AML_batch_11262022_20230103/C3L-07580.T.gtf.transcripts.gtf.gz 18201997 gtf d40f363eb3c442e037610da1abc457ba tumor_bone_marrow C3L-07580.RNA-Seq.S11_L003_R1.Tbm 904f3b52-5cda-4f18-9dc6-51e59da953c0 C3L-07580.RNA-Seq.S11_L003_R1.Tbm 904f3b52-5cda-4f18-9dc6-51e59da953c0
C3L-07588 AML RNA-Seq_Transcript v1.5 20230103 Y3 /CPTAC3.Y3_WashU/AML/CPTAC3_AML_RNA-Seq_Transcript_v1.5_AML_batch_11262022_20230103/C3L-07588.T.gtf.transcripts.gtf.gz 17237362 gtf 11ba184749d5cde36c16ace319bbce8e tumor_bone_marrow C3L-07588.RNA-Seq.S5_L002_R1.Tbm 879707da-3b20-421a-9849-4d5a080beed5 C3L-07588.RNA-Seq.S5_L002_R1.Tbm 879707da-3b20-421a-9849-4d5a080beed5
C3L-07611 GBM RNA-Seq_Transcript v1.4 20211028 Y3 /CPTAC3.Y3_WashU/GBM/CPTAC3_GBM_RNA-Seq_Transcript_v1.4_batch_1021_20211028/C3L-07611.tumor.transcripts.gtf.gz 19946353 gtf 040f77d24cbe406836196220287df1a4 tumor C3L-07611.RNA-Seq.R1.T a19a4590-1bba-4407-8833-4c424dbd4e7a C3L-07611.RNA-Seq.R2.T 715c0803-92be-4427-84a0-318fb948c958
C3N-00148 CCRCC RNA-Seq_Transcript v1.2 20200812 Y3 /CPTAC3.Y3_WashU/CCRCC/CPTAC3_CCRCC_RNA-Seq_Transcript_v1.2_Y3.20200620_20200812/C3N-00148.tissue_normal.transcripts.gtf.gz 21495642 gtf a8a7479d40d5eb4bfdf813fa445251d8 tissue_normal C3N-00148.RNA-Seq.R1.A e8912d94-cb0d-43a9-8162-74cfaa687f6b C3N-00148.RNA-Seq.R2.A 295e5db0-2734-4385-9867-95978059c72f
C3N-00148 CCRCC RNA-Seq_Transcript v1.2 20200812 Y3 /CPTAC3.Y3_WashU/CCRCC/CPTAC3_CCRCC_RNA-Seq_Transcript_v1.2_Y3.20200620_20200812/C3N-00148.tumor.transcripts.gtf.gz 22252314 gtf 25d90efb5428cc8b640e613bff700852 tumor C3N-00148.RNA-Seq.R1.T 48e2576c-57dd-4e80-8362-7c35daed4204 C3N-00148.RNA-Seq.R2.T a250f5fc-fc5b-45e1-83b7-9139dd06398e
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