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Download of RNA-Seq, miRNA-Seq, methylation data to katmai
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* .05386456 Tb in 35 files
* Work dir: /diskmnt/Projects/cptac_scratch/CPTAC3.workflow/import.Y3/20221123.AML_35
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mwyczalkowski committed Nov 23, 2022
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35 changes: 35 additions & 0 deletions BamMap/katmai.BamMap.dat
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Expand Up @@ -4367,6 +4367,11 @@ C3L-06367.MethArray.Red.Tbm C3L-06367 AML Methylation Array tumor_bone_marrow /d
C3L-06367.miRNA-Seq.Tbm C3L-06367 AML miRNA-Seq tumor_bone_marrow /diskmnt/Projects/cptac/GDC_import/data/85d9e70e-cebd-402d-8fea-b048242b92cc/210702_UNC32-K00270_0289_AHKJ22BBXY_CACGAT_S28_L005_R1_001.unaln.bam 315340165 BAM NA 85d9e70e-cebd-402d-8fea-b048242b92cc katmai
C3L-06367.RNA-Seq.R1.Tbm C3L-06367 AML RNA-Seq tumor_bone_marrow /diskmnt/Projects/cptac/GDC_import/data/9fb2e454-11e7-44fd-97a5-abd68cc50890/210708_UNC32-K00270_0290_BHLLHHBBXY_CGTCTGCG-TTCACAAT_S1_L001_R1_001.fastq.gz 4138889339 FASTQ NA 9fb2e454-11e7-44fd-97a5-abd68cc50890 katmai
C3L-06367.RNA-Seq.R2.Tbm C3L-06367 AML RNA-Seq tumor_bone_marrow /diskmnt/Projects/cptac/GDC_import/data/9ff587b2-7250-4cae-b7f7-6be208c9ae33/210708_UNC32-K00270_0290_BHLLHHBBXY_CGTCTGCG-TTCACAAT_S1_L001_R2_001.fastq.gz 4468004169 FASTQ NA 9ff587b2-7250-4cae-b7f7-6be208c9ae33 katmai
C3L-06368.MethArray.Green.Tpb C3L-06368 AML Methylation Array tumor_peripheral_blood /diskmnt/Projects/cptac/GDC_import/data/51fdafb1-e612-4aad-9827-910512d68387/205705520128_R06C01_Grn.idat 13677886 IDAT NA 51fdafb1-e612-4aad-9827-910512d68387 katmai
C3L-06368.MethArray.Red.Tpb C3L-06368 AML Methylation Array tumor_peripheral_blood /diskmnt/Projects/cptac/GDC_import/data/de5be602-4db6-4f55-8327-b84108002dad/205705520128_R06C01_Red.idat 13677886 IDAT NA de5be602-4db6-4f55-8327-b84108002dad katmai
C3L-06368.miRNA-Seq.Tbm.hg38 C3L-06368 AML miRNA-Seq tumor_bone_marrow /diskmnt/Projects/cptac/GDC_import/data/9ba5b742-39d0-487d-818d-45d243a1d61a/34388533-55c7-4511-b90c-ae46f922d89f_mirnaseq_gdc_realn.bam 215482150 BAM hg38 9ba5b742-39d0-487d-818d-45d243a1d61a katmai
C3L-06368.RNA-Seq.R1.Tbm C3L-06368 AML RNA-Seq tumor_bone_marrow /diskmnt/Projects/cptac/GDC_import/data/8d70e8fc-2f6a-4da7-8a13-3cb09163563d/211207_UNC32-K00270_0306_BHMW5YBBXY_GGAGCGTC-GTCCGTGC_S20_L005_R1_001.fastq.gz 4032905959 FASTQ NA 8d70e8fc-2f6a-4da7-8a13-3cb09163563d katmai
C3L-06368.RNA-Seq.R2.Tbm C3L-06368 AML RNA-Seq tumor_bone_marrow /diskmnt/Projects/cptac/GDC_import/data/08b3a1d2-9038-4e93-b052-9438bf1ec5cd/211207_UNC32-K00270_0306_BHMW5YBBXY_GGAGCGTC-GTCCGTGC_S20_L005_R2_001.fastq.gz 4345871199 FASTQ NA 08b3a1d2-9038-4e93-b052-9438bf1ec5cd katmai
C3L-06369.MethArray.Green.Tbm C3L-06369 AML Methylation Array tumor_bone_marrow /diskmnt/Projects/cptac/GDC_import/data/522a2b24-cc1c-443d-9b16-2a220f253e1f/204930640111_R06C01_Grn.idat 13677960 IDAT NA 522a2b24-cc1c-443d-9b16-2a220f253e1f katmai
C3L-06369.MethArray.Red.Tbm C3L-06369 AML Methylation Array tumor_bone_marrow /diskmnt/Projects/cptac/GDC_import/data/e073afad-a137-4894-bf4a-f9479cb63425/204930640111_R06C01_Red.idat 13677960 IDAT NA e073afad-a137-4894-bf4a-f9479cb63425 katmai
C3L-06369.miRNA-Seq.Tbm C3L-06369 AML miRNA-Seq tumor_bone_marrow /diskmnt/Projects/cptac/GDC_import/data/2dff295d-0f3c-43e7-a8fb-7754dd89cdeb/210817_UNC31-K00269_0302_AHLCTHBBXY_CAGGCG_S8_L003_R1_001.unaln.bam 178546103 BAM NA 2dff295d-0f3c-43e7-a8fb-7754dd89cdeb katmai
Expand Down Expand Up @@ -4517,6 +4522,11 @@ C3L-07013.MethArray.Red.Tbm C3L-07013 AML Methylation Array tumor_bone_marrow /d
C3L-07013.miRNA-Seq.Tbm C3L-07013 AML miRNA-Seq tumor_bone_marrow /diskmnt/Projects/cptac/GDC_import/data/f49a134c-f0f2-4b94-b21a-78747ab82b9b/220505_UNC32-K00270_0319_AHMV2KBBXY_CCAACA_S4_L003_R1_001.unaln.bam 170562530 BAM NA f49a134c-f0f2-4b94-b21a-78747ab82b9b katmai
C3L-07013.RNA-Seq.R1.Tbm C3L-07013 AML RNA-Seq tumor_bone_marrow /diskmnt/Projects/cptac/GDC_import/data/17aeb355-fa4f-4ff5-9fd5-8d0e21aff2d3/211207_UNC32-K00270_0306_BHMW5YBBXY_CTACGACA-GAGTCCAA_S14_L004_R1_001.fastq.gz 3609610481 FASTQ NA 17aeb355-fa4f-4ff5-9fd5-8d0e21aff2d3 katmai
C3L-07013.RNA-Seq.R2.Tbm C3L-07013 AML RNA-Seq tumor_bone_marrow /diskmnt/Projects/cptac/GDC_import/data/1023c6f2-892a-4949-82ec-e92440e8f394/211207_UNC32-K00270_0306_BHMW5YBBXY_CTACGACA-GAGTCCAA_S14_L004_R2_001.fastq.gz 4145611122 FASTQ NA 1023c6f2-892a-4949-82ec-e92440e8f394 katmai
C3L-07019.MethArray.Green.Tbm C3L-07019 AML Methylation Array tumor_bone_marrow /diskmnt/Projects/cptac/GDC_import/data/0db3e071-78c8-4e30-95a5-11b49e93a0cc/205987770157_R02C01_Grn.idat 13677885 IDAT NA 0db3e071-78c8-4e30-95a5-11b49e93a0cc katmai
C3L-07019.MethArray.Red.Tbm C3L-07019 AML Methylation Array tumor_bone_marrow /diskmnt/Projects/cptac/GDC_import/data/e64d212b-e537-4f1a-abad-d28ba24e6473/205987770157_R02C01_Red.idat 13677885 IDAT NA e64d212b-e537-4f1a-abad-d28ba24e6473 katmai
C3L-07019.miRNA-Seq.Tbm.hg38 C3L-07019 AML miRNA-Seq tumor_bone_marrow /diskmnt/Projects/cptac/GDC_import/data/7bbf8caa-4fe0-4d01-aeb3-48e2c64ed4db/77a2c7e2-9464-4f07-938e-c1126595e06a_mirnaseq_gdc_realn.bam 238778089 BAM hg38 7bbf8caa-4fe0-4d01-aeb3-48e2c64ed4db katmai
C3L-07019.RNA-Seq.R1.Tbm C3L-07019 AML RNA-Seq tumor_bone_marrow /diskmnt/Projects/cptac/GDC_import/data/f5b8d86a-0576-45f8-8a3c-d1924b5017bf/220114_UNC32-K00270_0310_AHMWT5BBXY_CATAATAC-TTCTAACG_S6_L002_R1_001.fastq.gz 3838679067 FASTQ NA f5b8d86a-0576-45f8-8a3c-d1924b5017bf katmai
C3L-07019.RNA-Seq.R2.Tbm C3L-07019 AML RNA-Seq tumor_bone_marrow /diskmnt/Projects/cptac/GDC_import/data/3627b3ad-a79d-4043-9786-42f687c86ee9/220114_UNC32-K00270_0310_AHMWT5BBXY_CATAATAC-TTCTAACG_S6_L002_R2_001.fastq.gz 4199560972 FASTQ NA 3627b3ad-a79d-4043-9786-42f687c86ee9 katmai
C3L-07032.RNA-Seq.genomic.A.hg38 C3L-07032 PDA RNA-Seq tissue_normal /diskmnt/Projects/cptac/GDC_import/data/1bb96c79-335f-49d0-a3f5-a9ceb8597ccb/53ee9ccb-3048-4123-9b1a-6f286e2ee069.rna_seq.genomic.gdc_realn.bam 9496427474 BAM hg38 1bb96c79-335f-49d0-a3f5-a9ceb8597ccb katmai
C3L-07033.RNA-Seq.genomic.A.hg38 C3L-07033 PDA RNA-Seq tissue_normal /diskmnt/Projects/cptac/GDC_import/data/116fa544-d8af-4017-b949-394d9b3d086d/5d446ce9-7572-43c4-9be0-defc29dd7d6b.rna_seq.genomic.gdc_realn.bam 10282231536 BAM hg38 116fa544-d8af-4017-b949-394d9b3d086d katmai
C3L-07034.RNA-Seq.genomic.A.hg38 C3L-07034 PDA RNA-Seq tissue_normal /diskmnt/Projects/cptac/GDC_import/data/e7978ba1-e61a-48fa-81ab-6eb68e205eb0/210dfc8a-9ab8-4dc8-8002-939823690011.rna_seq.genomic.gdc_realn.bam 7963264496 BAM hg38 e7978ba1-e61a-48fa-81ab-6eb68e205eb0 katmai
Expand All @@ -4534,16 +4544,41 @@ C3L-07437.MethArray.Red.Tpb C3L-07437 AML Methylation Array tumor_peripheral_blo
C3L-07437.miRNA-Seq.Tpb C3L-07437 AML miRNA-Seq tumor_peripheral_blood /diskmnt/Projects/cptac/GDC_import/data/8f930cdf-c82c-4e0a-ab86-e8bb1ee6f85b/220125_UNC32-K00270_0311_AHMNYYBBXY_CATTTT_S7_L003_R1_001.unaln.bam 281880782 BAM NA 8f930cdf-c82c-4e0a-ab86-e8bb1ee6f85b katmai
C3L-07437.RNA-Seq.R1.Tpb C3L-07437 AML RNA-Seq tumor_peripheral_blood /diskmnt/Projects/cptac/GDC_import/data/19f81621-5e25-4547-9d95-f56513c37ea3/211207_UNC32-K00270_0306_BHMW5YBBXY_CAACAATG-CTTCACGG_S30_L008_R1_001.fastq.gz 3625194988 FASTQ NA 19f81621-5e25-4547-9d95-f56513c37ea3 katmai
C3L-07437.RNA-Seq.R2.Tpb C3L-07437 AML RNA-Seq tumor_peripheral_blood /diskmnt/Projects/cptac/GDC_import/data/37df23e8-805f-4e27-85cd-dc39f8570266/211207_UNC32-K00270_0306_BHMW5YBBXY_CAACAATG-CTTCACGG_S30_L008_R2_001.fastq.gz 4118264722 FASTQ NA 37df23e8-805f-4e27-85cd-dc39f8570266 katmai
C3L-07438.MethArray.Green.Tbm C3L-07438 AML Methylation Array tumor_bone_marrow /diskmnt/Projects/cptac/GDC_import/data/e2e9eed3-cbc3-437d-826c-96ddf7517cfc/205705520145_R02C01_Grn.idat 13677885 IDAT NA e2e9eed3-cbc3-437d-826c-96ddf7517cfc katmai
C3L-07438.MethArray.Red.Tbm C3L-07438 AML Methylation Array tumor_bone_marrow /diskmnt/Projects/cptac/GDC_import/data/1d45490c-6267-4bb0-ada9-00be075b6dd9/205705520145_R02C01_Red.idat 13677885 IDAT NA 1d45490c-6267-4bb0-ada9-00be075b6dd9 katmai
C3L-07438.miRNA-Seq.Tbm.hg38 C3L-07438 AML miRNA-Seq tumor_bone_marrow /diskmnt/Projects/cptac/GDC_import/data/e7b6dcf3-ecdd-4a26-bfd7-525782a9d303/88e6e201-eae3-4355-be87-ab47e1e355f5_mirnaseq_gdc_realn.bam 229902845 BAM hg38 e7b6dcf3-ecdd-4a26-bfd7-525782a9d303 katmai
C3L-07438.RNA-Seq.R1.Tbm C3L-07438 AML RNA-Seq tumor_bone_marrow /diskmnt/Projects/cptac/GDC_import/data/dd4aae1f-4c30-43f4-89f5-904cefbc62b8/211207_UNC32-K00270_0306_BHMW5YBBXY_TACCGAGG-CCTGAACT_S12_L003_R1_001.fastq.gz 3652960890 FASTQ NA dd4aae1f-4c30-43f4-89f5-904cefbc62b8 katmai
C3L-07438.RNA-Seq.R2.Tbm C3L-07438 AML RNA-Seq tumor_bone_marrow /diskmnt/Projects/cptac/GDC_import/data/3e4ad93a-45f9-45a0-b087-8190f75c6d6d/211207_UNC32-K00270_0306_BHMW5YBBXY_TACCGAGG-CCTGAACT_S12_L003_R2_001.fastq.gz 4297595755 FASTQ NA 3e4ad93a-45f9-45a0-b087-8190f75c6d6d katmai
C3L-07439.MethArray.Green.Tpb C3L-07439 AML Methylation Array tumor_peripheral_blood /diskmnt/Projects/cptac/GDC_import/data/65eebb3e-2e03-41b2-824a-4d1a730a879e/205987780153_R01C01_Grn.idat 13677900 IDAT NA 65eebb3e-2e03-41b2-824a-4d1a730a879e katmai
C3L-07439.MethArray.Red.Tpb C3L-07439 AML Methylation Array tumor_peripheral_blood /diskmnt/Projects/cptac/GDC_import/data/24467b3c-6531-47aa-bcbf-9161bf286e16/205987780153_R01C01_Red.idat 13677900 IDAT NA 24467b3c-6531-47aa-bcbf-9161bf286e16 katmai
C3L-07439.miRNA-Seq.Tpb C3L-07439 AML miRNA-Seq tumor_peripheral_blood /diskmnt/Projects/cptac/GDC_import/data/0d92688a-ace0-45e7-927e-256c262d8216/220125_UNC32-K00270_0311_AHMNYYBBXY_CATGGC_S6_L003_R1_001.unaln.bam 188685033 BAM NA 0d92688a-ace0-45e7-927e-256c262d8216 katmai
C3L-07439.RNA-Seq.R1.Tpb C3L-07439 AML RNA-Seq tumor_peripheral_blood /diskmnt/Projects/cptac/GDC_import/data/8506fcf0-4ced-4a2a-90ed-878fa8d0f751/211207_UNC32-K00270_0306_BHMW5YBBXY_GGTGAACC-GCGTTGGA_S28_L007_R1_001.fastq.gz 3579652035 FASTQ NA 8506fcf0-4ced-4a2a-90ed-878fa8d0f751 katmai
C3L-07439.RNA-Seq.R2.Tpb C3L-07439 AML RNA-Seq tumor_peripheral_blood /diskmnt/Projects/cptac/GDC_import/data/691147a6-204e-4cfc-acf0-16b432c7ed3d/211207_UNC32-K00270_0306_BHMW5YBBXY_GGTGAACC-GCGTTGGA_S28_L007_R2_001.fastq.gz 3786729975 FASTQ NA 691147a6-204e-4cfc-acf0-16b432c7ed3d katmai
C3L-07488.MethArray.Green.Tbm C3L-07488 AML Methylation Array tumor_bone_marrow /diskmnt/Projects/cptac/GDC_import/data/b39ef819-23b2-43b7-8eb5-8dee6b9a0a83/205705520145_R03C01_Grn.idat 13677885 IDAT NA b39ef819-23b2-43b7-8eb5-8dee6b9a0a83 katmai
C3L-07488.MethArray.Red.Tbm C3L-07488 AML Methylation Array tumor_bone_marrow /diskmnt/Projects/cptac/GDC_import/data/2af118ea-c3b6-4ee1-94b5-4bf152412c3d/205705520145_R03C01_Red.idat 13677885 IDAT NA 2af118ea-c3b6-4ee1-94b5-4bf152412c3d katmai
C3L-07488.miRNA-Seq.Tbm.hg38 C3L-07488 AML miRNA-Seq tumor_bone_marrow /diskmnt/Projects/cptac/GDC_import/data/3cc648b2-31f0-4773-b188-3aae1aa2d1a3/70d79104-24ab-488d-8080-a7c3acc9b2b8_mirnaseq_gdc_realn.bam 218632946 BAM hg38 3cc648b2-31f0-4773-b188-3aae1aa2d1a3 katmai
C3L-07488.RNA-Seq.R1.Tbm C3L-07488 AML RNA-Seq tumor_bone_marrow /diskmnt/Projects/cptac/GDC_import/data/e86414bc-3288-40f9-a858-010e2ff7ef05/220114_UNC32-K00270_0310_AHMWT5BBXY_CCATTCGA-GTTGTCCG_S9_L003_R1_001.fastq.gz 4126283934 FASTQ NA e86414bc-3288-40f9-a858-010e2ff7ef05 katmai
C3L-07488.RNA-Seq.R2.Tbm C3L-07488 AML RNA-Seq tumor_bone_marrow /diskmnt/Projects/cptac/GDC_import/data/438ae9e4-1702-4bb9-b39c-11eac5b1171c/220114_UNC32-K00270_0310_AHMWT5BBXY_CCATTCGA-GTTGTCCG_S9_L003_R2_001.fastq.gz 4563495112 FASTQ NA 438ae9e4-1702-4bb9-b39c-11eac5b1171c katmai
C3L-07490.MethArray.Green.Tbm C3L-07490 AML Methylation Array tumor_bone_marrow /diskmnt/Projects/cptac/GDC_import/data/7a2f2d6b-a7d4-4b18-a5a4-63f485025570/205555390128_R05C01_Grn.idat 13677955 IDAT NA 7a2f2d6b-a7d4-4b18-a5a4-63f485025570 katmai
C3L-07490.MethArray.Red.Tbm C3L-07490 AML Methylation Array tumor_bone_marrow /diskmnt/Projects/cptac/GDC_import/data/f359d895-7a5b-4c09-809d-9cbdc63a8128/205555390128_R05C01_Red.idat 13677955 IDAT NA f359d895-7a5b-4c09-809d-9cbdc63a8128 katmai
C3L-07490.miRNA-Seq.Tbm C3L-07490 AML miRNA-Seq tumor_bone_marrow /diskmnt/Projects/cptac/GDC_import/data/f13a0eae-a044-4414-acd2-81068f92f0f9/210702_UNC32-K00270_0289_AHKJ22BBXY_CACTCA_S29_L005_R1_001.unaln.bam 179381519 BAM NA f13a0eae-a044-4414-acd2-81068f92f0f9 katmai
C3L-07490.RNA-Seq.R1.Tbm C3L-07490 AML RNA-Seq tumor_bone_marrow /diskmnt/Projects/cptac/GDC_import/data/2ebf6805-a5c8-43d5-8fee-730861c13580/210708_UNC32-K00270_0290_BHLLHHBBXY_TCGATATC-ACACGAGT_S4_L001_R1_001.fastq.gz 3720404856 FASTQ NA 2ebf6805-a5c8-43d5-8fee-730861c13580 katmai
C3L-07490.RNA-Seq.R2.Tbm C3L-07490 AML RNA-Seq tumor_bone_marrow /diskmnt/Projects/cptac/GDC_import/data/3215eaf9-a581-4e1b-b71b-3c96b7876cba/210708_UNC32-K00270_0290_BHLLHHBBXY_TCGATATC-ACACGAGT_S4_L001_R2_001.fastq.gz 4031405226 FASTQ NA 3215eaf9-a581-4e1b-b71b-3c96b7876cba katmai
C3L-07571.MethArray.Green.Tbm C3L-07571 AML Methylation Array tumor_bone_marrow /diskmnt/Projects/cptac/GDC_import/data/0d89020f-af5d-4b8e-9183-b51bb285696b/205987780094_R06C01_Grn.idat 13677891 IDAT NA 0d89020f-af5d-4b8e-9183-b51bb285696b katmai
C3L-07571.MethArray.Red.Tbm C3L-07571 AML Methylation Array tumor_bone_marrow /diskmnt/Projects/cptac/GDC_import/data/a43aef0f-5219-4e60-a817-f27cf214859f/205987780094_R06C01_Red.idat 13677891 IDAT NA a43aef0f-5219-4e60-a817-f27cf214859f katmai
C3L-07571.miRNA-Seq.Tbm.hg38 C3L-07571 AML miRNA-Seq tumor_bone_marrow /diskmnt/Projects/cptac/GDC_import/data/62442541-d113-443f-b1f6-391c79d707e4/b5f89cb5-0c02-4e18-b696-87039e45f027_mirnaseq_gdc_realn.bam 217930202 BAM hg38 62442541-d113-443f-b1f6-391c79d707e4 katmai
C3L-07571.RNA-Seq.R1.Tbm C3L-07571 AML RNA-Seq tumor_bone_marrow /diskmnt/Projects/cptac/GDC_import/data/7940dd9a-50c5-42ef-8e5c-e16f364f7873/220114_UNC32-K00270_0310_AHMWT5BBXY_CGGAACTG-CACTACGA_S10_L003_R1_001.fastq.gz 3143905457 FASTQ NA 7940dd9a-50c5-42ef-8e5c-e16f364f7873 katmai
C3L-07571.RNA-Seq.R2.Tbm C3L-07571 AML RNA-Seq tumor_bone_marrow /diskmnt/Projects/cptac/GDC_import/data/fde668ac-9228-4e33-865c-d302024c9eff/220114_UNC32-K00270_0310_AHMWT5BBXY_CGGAACTG-CACTACGA_S10_L003_R2_001.fastq.gz 3461894674 FASTQ NA fde668ac-9228-4e33-865c-d302024c9eff katmai
C3L-07580.MethArray.Green.Tbm C3L-07580 AML Methylation Array tumor_bone_marrow /diskmnt/Projects/cptac/GDC_import/data/5c2e4ea6-875b-45ce-ae0f-36e7478ae0c2/205987780161_R05C01_Grn.idat 13677900 IDAT NA 5c2e4ea6-875b-45ce-ae0f-36e7478ae0c2 katmai
C3L-07580.MethArray.Red.Tbm C3L-07580 AML Methylation Array tumor_bone_marrow /diskmnt/Projects/cptac/GDC_import/data/2d330bb6-029a-43ea-bba1-3ab4c385a4fb/205987780161_R05C01_Red.idat 13677900 IDAT NA 2d330bb6-029a-43ea-bba1-3ab4c385a4fb katmai
C3L-07580.miRNA-Seq.Tbm.hg38 C3L-07580 AML miRNA-Seq tumor_bone_marrow /diskmnt/Projects/cptac/GDC_import/data/6078159e-4b37-4e6c-95a2-48273e5f7c6b/6443ddfa-6f06-4d5e-aad2-b53126da8cb3_mirnaseq_gdc_realn.bam 205517832 BAM hg38 6078159e-4b37-4e6c-95a2-48273e5f7c6b katmai
C3L-07580.RNA-Seq.R1.Tbm C3L-07580 AML RNA-Seq tumor_bone_marrow /diskmnt/Projects/cptac/GDC_import/data/904f3b52-5cda-4f18-9dc6-51e59da953c0/220114_UNC32-K00270_0310_AHMWT5BBXY_TAAGGTCA-TGTCGTAG_S11_L003_R1_001.fastq.gz 4232810155 FASTQ NA 904f3b52-5cda-4f18-9dc6-51e59da953c0 katmai
C3L-07580.RNA-Seq.R2.Tbm C3L-07580 AML RNA-Seq tumor_bone_marrow /diskmnt/Projects/cptac/GDC_import/data/c4858986-72e7-48a0-9267-d568553a0c6b/220114_UNC32-K00270_0310_AHMWT5BBXY_TAAGGTCA-TGTCGTAG_S11_L003_R2_001.fastq.gz 4589670423 FASTQ NA c4858986-72e7-48a0-9267-d568553a0c6b katmai
C3L-07588.MethArray.Green.Tbm C3L-07588 AML Methylation Array tumor_bone_marrow /diskmnt/Projects/cptac/GDC_import/data/cb4b926c-412f-457e-a4e0-57b944d9f7ec/205707890036_R06C01_Grn.idat 13677890 IDAT NA cb4b926c-412f-457e-a4e0-57b944d9f7ec katmai
C3L-07588.MethArray.Red.Tbm C3L-07588 AML Methylation Array tumor_bone_marrow /diskmnt/Projects/cptac/GDC_import/data/bcc4de63-b60d-47d6-8f71-1c3ffe771008/205707890036_R06C01_Red.idat 13677890 IDAT NA bcc4de63-b60d-47d6-8f71-1c3ffe771008 katmai
C3L-07588.miRNA-Seq.Tbm.hg38 C3L-07588 AML miRNA-Seq tumor_bone_marrow /diskmnt/Projects/cptac/GDC_import/data/3a61f2d4-a263-4984-89f2-58f0da64ae89/4d2d4ae7-1d67-4518-a0aa-593d9add6327_mirnaseq_gdc_realn.bam 238580265 BAM hg38 3a61f2d4-a263-4984-89f2-58f0da64ae89 katmai
C3L-07588.RNA-Seq.R1.Tbm C3L-07588 AML RNA-Seq tumor_bone_marrow /diskmnt/Projects/cptac/GDC_import/data/879707da-3b20-421a-9849-4d5a080beed5/220114_UNC32-K00270_0310_AHMWT5BBXY_AGCTCGCT-GCAGAATC_S5_L002_R1_001.fastq.gz 4287777946 FASTQ NA 879707da-3b20-421a-9849-4d5a080beed5 katmai
C3L-07588.RNA-Seq.R2.Tbm C3L-07588 AML RNA-Seq tumor_bone_marrow /diskmnt/Projects/cptac/GDC_import/data/4a6225c7-a60a-4c19-9fb7-e0a0b0a39f82/220114_UNC32-K00270_0310_AHMWT5BBXY_AGCTCGCT-GCAGAATC_S5_L002_R2_001.fastq.gz 4694985239 FASTQ NA 4a6225c7-a60a-4c19-9fb7-e0a0b0a39f82 katmai
C3L-07611.MethArray.Green.T C3L-07611 GBM Methylation Array tumor /diskmnt/Projects/cptac/GDC_import/data/a80351fb-be92-4aae-9b24-8c2e2370af27/204930640111_R05C01_Grn.idat 13677956 IDAT NA a80351fb-be92-4aae-9b24-8c2e2370af27 katmai
C3L-07611.MethArray.Red.T C3L-07611 GBM Methylation Array tumor /diskmnt/Projects/cptac/GDC_import/data/400527c0-c3b5-46c0-a60e-1cb3f76ee084/204930640111_R05C01_Red.idat 13677956 IDAT NA 400527c0-c3b5-46c0-a60e-1cb3f76ee084 katmai
C3L-07611.miRNA-Seq.T C3L-07611 GBM miRNA-Seq tumor /diskmnt/Projects/cptac/GDC_import/data/c4abe2f9-b7a8-4da2-a185-9be4ff656788/210702_UNC32-K00270_0289_AHKJ22BBXY_TCATTC_S37_L005_R1_001.unaln.bam 204155380 BAM NA c4abe2f9-b7a8-4da2-a185-9be4ff656788 katmai
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