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Merge branch 'master' of https://github.com/ding-lab/CPTAC3.catalog
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@mwyczalkowski
mwyczalkowski committed Dec 8, 2022
2 parents 7b6f859 + 388b322 commit 505aa4c
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7 changes: 7 additions & 0 deletions BamMap/MGI.BamMap.dat
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Expand Up @@ -2514,6 +2514,7 @@ C3L-06356.WXS.Nbc.hg38 C3L-06356 AML WXS buccal_normal /gscmnt/gc2541/CPTAC3-dat
C3L-06357.WXS.Nbc.hg38 C3L-06357 AML WXS buccal_normal /gscmnt/gc2541/CPTAC3-data/GDC_import/data/27df62fa-1212-431d-8211-9981886b123d/38def854-7f69-4574-8538-a33f2ddac72d_wxs_gdc_realn.bam 36611768867 BAM hg38 27df62fa-1212-431d-8211-9981886b123d MGI
C3L-06361.WXS.Nbc.hg38 C3L-06361 AML WXS buccal_normal /gscmnt/gc2541/CPTAC3-data/GDC_import/data/da2e2061-120f-44eb-90c4-e49d0abe0df4/b6af685c-5835-4a9f-9122-16af2393145e_wxs_gdc_realn.bam 36905068313 BAM hg38 da2e2061-120f-44eb-90c4-e49d0abe0df4 MGI
C3L-06364.WXS.Nbc.hg38 C3L-06364 AML WXS buccal_normal /gscmnt/gc2541/CPTAC3-data/GDC_import/data/781cad08-5f3f-483a-b56a-0415097dd98e/9b14a9ae-a157-467e-9dec-3fe18c5de85b_wxs_gdc_realn.bam 32230780864 BAM hg38 781cad08-5f3f-483a-b56a-0415097dd98e MGI
C3L-06368.WXS.Nbc.hg38 C3L-06368 AML WXS buccal_normal /gscmnt/gc2619/dinglab_cptac3/GDC_import/data/431be984-ae6d-416d-9841-1b56a4ceeb6f/6e1ac39e-ec0f-4c96-b490-7efaf7351677_wxs_gdc_realn.bam 37045085962 BAM hg38 431be984-ae6d-416d-9841-1b56a4ceeb6f MGI
C3L-06369.WXS.Nbc.hg38 C3L-06369 AML WXS buccal_normal /gscmnt/gc2541/CPTAC3-data/GDC_import/data/cfec7a25-deba-47ba-baa1-a98913007129/1082aa55-703a-44cd-b5c1-ef42b3954cd1_wxs_gdc_realn.bam 30834556167 BAM hg38 cfec7a25-deba-47ba-baa1-a98913007129 MGI
C3L-06374.WXS.Nbc.hg38 C3L-06374 AML WXS buccal_normal /gscmnt/gc2541/CPTAC3-data/GDC_import/data/91de498d-bc4c-4448-a7ec-eda0c295ee08/2cb5354f-1075-45c3-9267-37753db6669a_wxs_gdc_realn.bam 22379237818 BAM hg38 91de498d-bc4c-4448-a7ec-eda0c295ee08 MGI
C3L-06386.WXS.Nbc.hg38 C3L-06386 AML WXS buccal_normal /gscmnt/gc2541/CPTAC3-data/GDC_import/data/27966373-38a4-4697-8eda-28539d19e5c6/c432125d-2453-4449-a6dd-ae35376eb87f_wxs_gdc_realn.bam 34749480704 BAM hg38 27966373-38a4-4697-8eda-28539d19e5c6 MGI
Expand Down Expand Up @@ -2543,14 +2544,20 @@ C3L-06983.WXS.Nbc.hg38 C3L-06983 AML WXS buccal_normal /gscmnt/gc2541/CPTAC3-dat
C3L-06984.WXS.Nbc.hg38 C3L-06984 AML WXS buccal_normal /gscmnt/gc2541/CPTAC3-data/GDC_import/data/7810bf2c-1091-45bc-b9e5-9814def4ef7f/b0c55a80-01d8-42eb-8047-5299de48ffc8_wxs_gdc_realn.bam 23341344380 BAM hg38 7810bf2c-1091-45bc-b9e5-9814def4ef7f MGI
C3L-07012.WXS.Nbc.hg38 C3L-07012 AML WXS buccal_normal /gscmnt/gc2541/CPTAC3-data/GDC_import/data/64e2bdb1-f10f-420d-a03e-60e7d01af376/ec411e25-2a11-4cc9-aaea-806a5e34a08d_wxs_gdc_realn.bam 31960837320 BAM hg38 64e2bdb1-f10f-420d-a03e-60e7d01af376 MGI
C3L-07013.WXS.Nbc.hg38 C3L-07013 AML WXS buccal_normal /gscmnt/gc2541/CPTAC3-data/GDC_import/data/6d83953f-9d59-45fd-9f1c-48d917f0efe9/2cfc39c7-9454-401a-b69a-5300bbb3093a_wxs_gdc_realn.bam 44977778426 BAM hg38 6d83953f-9d59-45fd-9f1c-48d917f0efe9 MGI
C3L-07019.WXS.Nbc.hg38 C3L-07019 AML WXS buccal_normal /gscmnt/gc2619/dinglab_cptac3/GDC_import/data/fd859c96-110c-404f-b830-598ebb95a224/66fca7a6-95f8-4982-8ba6-e016beee43d0_wxs_gdc_realn.bam 42197983317 BAM hg38 fd859c96-110c-404f-b830-598ebb95a224 MGI
C3L-07202.WXS.N C3L-07202 GBM WXS blood_normal /gscmnt/gc2619/dinglab_cptac3/GDC_import/data/9cfa2645-0420-4d57-a7e6-0fba83c81c42/CPT0408730002.WholeExome.RP-1303.bam 26749694695 BAM hg19 9cfa2645-0420-4d57-a7e6-0fba83c81c42 MGI
C3L-07202.WXS.N.hg38 C3L-07202 GBM WXS blood_normal /gscmnt/gc2541/CPTAC3-data/GDC_import/data/5d21eff9-b0d4-40dd-ad5d-fd6387a07eed/9dc15f55-5d18-43e8-ae78-4f7ed0f957f5_wxs_gdc_realn.bam 36976133990 BAM hg38 5d21eff9-b0d4-40dd-ad5d-fd6387a07eed MGI
C3L-07202.WXS.T C3L-07202 GBM WXS tumor /gscmnt/gc2619/dinglab_cptac3/GDC_import/data/08c3554c-d4d2-4e22-a091-2a8a22a88d90/CPT0407650010.WholeExome.RP-1303.bam 25141500331 BAM hg19 08c3554c-d4d2-4e22-a091-2a8a22a88d90 MGI
C3L-07213.WXS.N C3L-07213 GBM WXS blood_normal /gscmnt/gc2619/dinglab_cptac3/GDC_import/data/2e4ad5e7-fe94-4252-a927-7e60bfbddf0d/CPT0408780002.WholeExome.RP-1303.bam 24378992351 BAM hg19 2e4ad5e7-fe94-4252-a927-7e60bfbddf0d MGI
C3L-07213.WXS.N.hg38 C3L-07213 GBM WXS blood_normal /gscmnt/gc2541/CPTAC3-data/GDC_import/data/51e744f3-1253-44bf-9b98-c26271785d96/64426bc4-0109-4c2e-89dc-b6b4509ba4d2_wxs_gdc_realn.bam 33733613698 BAM hg38 51e744f3-1253-44bf-9b98-c26271785d96 MGI
C3L-07213.WXS.T C3L-07213 GBM WXS tumor /gscmnt/gc2619/dinglab_cptac3/GDC_import/data/6b215bb0-a079-4c59-b74a-c3263ccfe118/CPT0407970010.WholeExome.RP-1303.bam 20738364712 BAM hg19 6b215bb0-a079-4c59-b74a-c3263ccfe118 MGI
C3L-07437.WXS.Nbc.hg38 C3L-07437 AML WXS buccal_normal /gscmnt/gc2541/CPTAC3-data/GDC_import/data/2d79233e-307d-4835-b070-47feba860d01/98dffd8c-fa8d-4a22-8aa7-340942a012dd_wxs_gdc_realn.bam 39957535150 BAM hg38 2d79233e-307d-4835-b070-47feba860d01 MGI
C3L-07438.WXS.Nbc.hg38 C3L-07438 AML WXS buccal_normal /gscmnt/gc2619/dinglab_cptac3/GDC_import/data/bc7cc37e-99f4-496c-bf75-933da02323a5/dd76fef5-8d08-4d6d-b3e8-6e3da3fefe8b_wxs_gdc_realn.bam 37655857885 BAM hg38 bc7cc37e-99f4-496c-bf75-933da02323a5 MGI
C3L-07439.WXS.Nbc.hg38 C3L-07439 AML WXS buccal_normal /gscmnt/gc2541/CPTAC3-data/GDC_import/data/eed05d67-1bf7-436f-bfdb-b07dd6beb964/0efd2a71-a26d-41cf-99b4-dd0438320771_wxs_gdc_realn.bam 85771065654 BAM hg38 eed05d67-1bf7-436f-bfdb-b07dd6beb964 MGI
C3L-07488.WXS.Nbc.hg38 C3L-07488 AML WXS buccal_normal /gscmnt/gc2619/dinglab_cptac3/GDC_import/data/e8feacbe-f33f-4a81-a083-7f8943ab8acd/c6f85b46-aaa2-49f1-ade3-c2fd53bf5597_wxs_gdc_realn.bam 28867684342 BAM hg38 e8feacbe-f33f-4a81-a083-7f8943ab8acd MGI
C3L-07571.WXS.Nbc.hg38 C3L-07571 AML WXS buccal_normal /gscmnt/gc2619/dinglab_cptac3/GDC_import/data/047efbf7-3f30-4e72-8121-f1b6d24124a4/3bbb0c62-fd36-4be3-824d-3a7fdeb81983_wxs_gdc_realn.bam 46562922918 BAM hg38 047efbf7-3f30-4e72-8121-f1b6d24124a4 MGI
C3L-07580.WXS.Nbc.hg38 C3L-07580 AML WXS buccal_normal /gscmnt/gc2619/dinglab_cptac3/GDC_import/data/cabb81e0-06ee-4b8e-8825-3255bf40595f/3c5a1d41-f628-46e3-9a3f-042eb106191f_wxs_gdc_realn.bam 51737708176 BAM hg38 cabb81e0-06ee-4b8e-8825-3255bf40595f MGI
C3L-07588.WXS.Nbc.hg38 C3L-07588 AML WXS buccal_normal /gscmnt/gc2619/dinglab_cptac3/GDC_import/data/7de34f0d-b4f8-4a3c-a39f-a24318894ff0/bb394496-7dec-495a-8c6b-9b625e3408fc_wxs_gdc_realn.bam 44977193608 BAM hg38 7de34f0d-b4f8-4a3c-a39f-a24318894ff0 MGI
C3L-07611.WXS.N C3L-07611 GBM WXS blood_normal /gscmnt/gc2619/dinglab_cptac3/GDC_import/data/1b7849bc-141f-4fcd-9d8e-050d04c9d724/CPT0408580002.WholeExome.RP-1303.bam 26865804794 BAM hg19 1b7849bc-141f-4fcd-9d8e-050d04c9d724 MGI
C3L-07611.WXS.N.hg38 C3L-07611 GBM WXS blood_normal /gscmnt/gc2541/CPTAC3-data/GDC_import/data/49d7c1cf-db69-41a6-9cbb-88f382ced875/3c805b24-a57c-4477-996b-927a7fe9ccb2_wxs_gdc_realn.bam 37940973867 BAM hg38 49d7c1cf-db69-41a6-9cbb-88f382ced875 MGI
C3L-07611.WXS.T C3L-07611 GBM WXS tumor /gscmnt/gc2619/dinglab_cptac3/GDC_import/data/9eb37687-fdb1-4d97-8fe5-2a7a374d3395/CPT0408500007.WholeExome.RP-1303.bam 22260035637 BAM hg19 9eb37687-fdb1-4d97-8fe5-2a7a374d3395 MGI
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